Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00315 atgGAATCTACAAATCTACATCATCTCCAAGACCAACAACATCCTCCTTCTGTTGGaagaaccaccaccaccaactcTTGGACCCCAAACTTCACTTTGAATAATGCTACAGGTAGCTTCAACTCAAATAACCTACAAGAAGATAATCCTAGATCATATTCAAGATCATCTTTAACACACAACAAGAACCATATGATTCAAGATTTAggttatcatcatcatcatcatcatcatgatcagTGGACAAGGACTAATGTTGCTACTGTAGAAGAGAGCTGCTTAAACAGAAACCATGAATCAAGTCATAACAACTTAGATTCACATGAATTTTCCAAGAATAGTAGTAATACTATTAAGGAAGAGATCTCATTTGCTAATTTCCCCAAATTCACTGAAATGCTTAATTACACTACTCCTAATTCCAATTTAGAAAACTATCCAGTAACACAGATGAAGAATATTAATAATGAAGAGCACAAAGATATGAATGCTCTTATGCTCAAGACCCTTTTTACTGCTGAAGATTTTTATAATGCTCAAAATTATCCAAATGTTGGAGGCACTAGTAACAATATTAGTAGCCAGATTCACCCCAgtataaatatctcaaacttgAATCGTTACTCGTCTTCGCCCGGTTCATCCGCGTTGGATATGAACATGCAGTCATTAGATCTATTAACTAATTCACCAACATCACTTAGCCAACATTCACAAGATCATCAAAATCATCTTGGTAGATTTACTACTCAAGATCATGATAACCTTTCTTTTAGTCTAATTCATCCTATGCCGCAACCCAACATCATGTCATCTTCTACTAACTCTATTAATAAGCCACCAATATTCAGCAATGTTGAAACAAAGAGAGGATGCACCTTGATGGAGTCAAAGGCTTCTCAGTCTCAAACAGCATTGAAAAAACCACGAGCTTCATCAGAACCACGCCCTTCATGCCCACCCTTTAAGGTTAGGAAAGAGAAATTAGGGGATAGGATTGCATCTCTTCAACAATTGGTGGCTCCTTTTGGAAAGACAGACACTGCATCCGTACTCATGGAAGCTATTGGATACATCAAGTTCCTTCAAGGCCAAGTCGAGACACTGAGTGTTCCATATATGAAGTTatcacaaaaccaaaacaacagAGTGGTGCAAGGGGGTTCAGCCACAAGTGACACAAATGGTGAAGCAAAGCAAGATCTGAGAAGTAGAGGCCTATGTTTGGTGCCATTGTCATGCATGTCATACATAGCAGGTGATGGCTGCCCTGAGAGATCGCTGATTCATCTTTCAAGGTTTGAATGGATAAAATGTTTCAACTCATCTTCAAATGGTAGTGGAAGTATGGCTGacaattttaatgaaaatgatgAAGATTATGTTAATTCTAGTATTCTTGAAGCagttgaGGTGAAGAGTGGAGCAGATGGGTTCATAATCAGAATGAGGGATGGTAGACACTTGCGATGCGTCCATAACAGCCCGCACGGAGGACTACTTCCAGATTATGCACCACATCCTGCAATTGTGTTGAAGATGGAGGATGGGACTGGTCTACTTCTCCCCATAATTGTTTTGGAGATGCCAAGCGTCCTGTTAATGGCAGCAGTTCGTAATGTTCAAATAGCAAGACCTACTTTATATCAAGTAGTGAATGAGATGATTGACAAGATGGGTTATGAAGTCAGAGCTGTGAGAGTTACTAAAAGAGTTCACGAGGCGTATTTTGCTCAGCTATATCTTTCCAAGGTTGGAAATGAGTCAGAATGTATGAGCTTTGACCTTCGACCTTCTGATGCTATCAACATTGCCGTCAGATGCAAGGTGCCTATACAAGTCAACAAGTATTTGGCATACAGTGATGGAATGAGAGTAATTGAATCAGGCAAACTGTCAACTCAGTCCCCTGGTTCCGATGGCCCATTATTTACTGAACTGGATCGGTAG 1950 0.3744 MESTNLHHLQDQQHPPSVGRTTTTNSWTPNFTLNNATGSFNSNNLQEDNPRSYSRSSLTHNKNHMIQDLGYHHHHHHHDQWTRTNVATVEESCLNRNHESSHNNLDSHEFSKNSSNTIKEEISFANFPKFTEMLNYTTPNSNLENYPVTQMKNINNEEHKDMNALMLKTLFTAEDFYNAQNYPNVGGTSNNISSQIHPSINISNLNRYSSSPGSSALDMNMQSLDLLTNSPTSLSQHSQDHQNHLGRFTTQDHDNLSFSLIHPMPQPNIMSSSTNSINKPPIFSNVETKRGCTLMESKASQSQTALKKPRASSEPRPSCPPFKVRKEKLGDRIASLQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKLSQNQNNRVVQGGSATSDTNGEAKQDLRSRGLCLVPLSCMSYIAGDGCPERSLIHLSRFEWIKCFNSSSNGSGSMADNFNENDEDYVNSSILEAVEVKSGADGFIIRMRDGRHLRCVHNSPHGGLLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTLYQVVNEMIDKMGYEVRAVRVTKRVHEAYFAQLYLSKVGNESECMSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTQSPGSDGPLFTELDR 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00315 649 CDD bHLH_AtbHLH_like 320 370 IPR045239 -
Tsu07g00315 649 SUPERFAMILY Hypothetical protein TM0160 491 629 IPR036104 GO:0004518
Tsu07g00315 649 Pfam Bifunctional nuclease domain 510 620 IPR003729 GO:0004518
Tsu07g00315 649 ProSiteProfiles Bifunctional nuclease (BFN) domain profile. 491 626 IPR003729 GO:0004518
Tsu07g00315 649 MobiDBLite consensus disorder prediction 1 57 - -
Tsu07g00315 649 PANTHER BIFUNCTIONAL NUCLEASE 1 437 649 - -
Tsu07g00315 649 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 378 IPR036638 GO:0046983
Tsu07g00315 649 PANTHER VON HIPPEL-LINDAU PROTEIN 437 649 - -
Tsu07g00315 649 Gene3D - 323 386 IPR036638 GO:0046983
Tsu07g00315 649 Gene3D Bifunctional nuclease domain 498 631 IPR036104 GO:0004518
Tsu07g00315 649 MobiDBLite consensus disorder prediction 296 322 - -
Tsu07g00315 649 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00315 Tsu-Chr7 2420983 2430064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00315 118 417 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 42.388 7.93e-51 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00315 - - mtr:MTR_3g112170 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00315 07 2420983 2430064 Tsu07g00315 07 2420983 2430064 ECH