Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00287 ATGGCAATAACAACGGCTATATTTCTCACCTTCATTGCATCACTCACCACCACCTTCACCTTAACACATGCAGCAACACCACAAAACAACACCACAACTCACTCTGAAATTCAAGCCTTAATAACCTTCAAACTAAACCTTCTTGACCCACTTAACTCATTAGCTTCTTGGGATCCATCAACACCTTCAGCACCATGTGACTGGCATGGCATTCTCTGttacaacaataacaacagAGTTCACACAATACGCTTACCTCGTCTTCAACTCACTGGTTCACTCACTTCATCACTCTCTAATCTCTCACAGCTTCGAAAACTAAGTCTTCATTCCAACAATCTTAACTCTTCAAtaccttcttctctttctcacTGTCTCTTCCTCCGTGCTATTTATCTTCACAACAACTCTCTCTCCGGTAACCTTCCATCTTCACTTCTTAACCTCACCAACCTTCAAATTCTCAACCTTGCTCGTAACTTTCTCTCTGGTACTATCCCAAATCATCTCTCTAACTCTCTAAGATTCCTTGACTTGTCGTCTAACTCATTCTCCGGCGACATTCCGGGGAACTTTTCGTCGAAATCTCAGCTTCAACTCATCAACCTCTCACATAACAGTTTCACCGGTGGAATACCGGTTACTGTTGGAGCATTACAGCATTTGGAGTATCTTTGGTTAGACAATAATCATCTTCATGGAACGTTACCTTCTGCTGTTGCTAACTGTTCCTCTATGGTGCACCTTAGCGCAGAGGATAATTTCATTGGTGGGTTGATTCCTTCAACTGTAGGGACGATGCCAAAGCTTCAAGTGTTGTCACTTTCAATGAATCAACTTTCTGGTTTTGTCCCCACTTCACTGTTTTGCAATGAAGACAACaacagaaaaaataataacaccAATCTTAGAAATGTTCAACTTGCTTTTAATAGAATCACGGGTATTTCAAATCCACAAAATGGAAAATGTGTTAATGATTTTTTGGAGTTTTTAGACCTTAAAGAGAATCACATTATTCACACTTTGTTTCCTTCTTGGTTGACCAATGTGAAATCTTTGAGGACTCTTGATCTATCTGGAAACTCATTTTCAGGTTCTCTTCCTCAAGATATTGGAAATCTCTTCTTGTTAGAAGAGTTGAAGCTTTCTGATAATTTGTTATCTGGTGTTGTTCCAAGTAGCATTGTGAAATGTAGGTTGTTGAAGGTTCTTGATCTTCAAAGGAATCGATTTTCCGGTCTCATTCCTTATTTTCTTGGAGAGTTGATAAATCTGAAGGAGTTATCTCTTGGTGGTAACTTTTTTACTGGTTCAATTCCAAAGAGTTATGGAACTCTTCATGAGTTAGAAAATTTGGATTTAAGCAACAACAAACTCAATGGGATTTTGCCTTTCGAGATCATGCAGTTAGGTAACATGAGTGTTTTGAATCTCAGCAACAATAGATTCTCCGGTCAAGTTTCGTCTCGAATTGGAGACTTGATGGCTTTGCAAGTTCTTAATTTGAGTCAATGTGGGTTTTCTGGTAGTGTTCCAGCTACATTGGGGAATTTGATGAAACTGAGAGTTTTGGATTTAAGTAAACAAAATCTTTCAGGTGAGTTACCTGTTGAGGTTTTCGGATTACCGAGTTTGGAAGTTGTAGCACTTGATGAGAATCATTTGAGTGGTTCTGTTCCTGAGGGTTTCAGCAGCATTGTTAGTCTAAGTGCTTCAGCTTCAATCAATCATTTAGTAGGTAACATTGTTCCAAGTGTTATCTCTCAGCTTTCACGTTTAAAAGAGCTTAATTTGGGACAAAATGGATTGAAAGGTGATATCCCAGATGAGATATCAAATTGTTCATCTTTGAATTTACTTTATTTGGATGGTAATCACTTAACTGGTCACATACCACAATCCTTGTCAAATCTATCAAGTTTGAAATGGTTGAATCTCTCTTCAAATCAATTGACAGGAGAAATTCCTGTTGATCTTTCGCGCATTTCAGGTTTGAAGTATTTAAATGTTTCCAACAACAATCTAGAGGGCGAGATTCCTGAAATGTTGAGTTCTAAGTTCAATGACCCTTCTGTGTATGCAATGAACAAGAAGTTATGTGGGAAACCATTGCATAAAGAATGCGGAAAATCGAAAAGACGAAAGAGGAAAAAACTAATCATCATCATAGGTGTTGCAGCTGCAGGACTATGTCTTTTAGCATTGTGTTGCTGTGGCTATGTTTACAGTCTCTTAAGGTGGCGAAAAAAGCTTCGAGAAGGAGTAACAGGAGAGAAGAAACGCAGTCCAACAAGTGCAGGCTCAAATGGAGAAAGAAACAGCAGAGGAAGTGGTGAAAACGGAGGACCAAAACTCATAGtattcaacaacaaaatcacCTATGCAGAGACCTTAGAAGCAACAAGAAACTTCGATGAAGAAAACGTTTTAAGCCGAGGAAAACATGGACTTGTTTTCAAAGCCTCATATCAAGATGGAATGGTTCTATCAATTCGTAGACTTCCAAATGGAGCAACATTAATCGATGAAACCACATTCCGCAAAGAAGCAGAATCATTAGGTAAAGTTAAGCATCGAAACTTAACCGTTTTAAGGGGCTATTATCCTGGACCACCACCTGATGTAAGACTATTAGTCTATGATTACATGCCAAATGGAAATTTAGGTACATTGCTTCAAGAGGCTTCCCAACAAGATGGTCATGTTTTGAATTGGCCAATGCGTCATTTAATTGCATTAGGCATTGCTCGCGGGTTGGGTTATTTACACTCGGTGGAAATTGTTCATGGTGATGTTAAGCCTCAAAATGTTCTTTTTGATGCTGATTTTGAAGCTCATTTATCCGAATTCGGGTTGGACCGGCTAACAATGGTTAATCTCCCTGGACAAATAGAATCCGCAGCGTCATCGTCATCATTGACAACAGCGCCAGTTGGCTCGTTAGGCTACGTGGCACCGGAAGCGGTTTTAACCGGACAAGTGACAAAGGAAGGAGATATATATAGTTTTGGGATAGTTTTGTTGGAGATATTGACAGGAAGAAAAGCTGTGATGTTTACACAAGATGAAGATATAGTGAAGTGGGTGAAGAAACAATTACAAAAAGGTTTGATTTCAGAGTTGTTGGAACCTGGTTTGCTTGAGATTGATCAAGAATCATCAGAATGGGAAGAGTTTTTGTTAGGTGTTAAAGTTGCACTTCTTTGCACAGCACATGATCCTCTTGATAGACCTTCTATTAATGATATTGTTTTCATGCTTGAAGGTTGTCGTGTTGGACCTGATATTCCTTCTTCTGCTGATCCTACCACACTACCTTCACCTGTTTCTTga 3336 0.3837 MAITTAIFLTFIASLTTTFTLTHAATPQNNTTTHSEIQALITFKLNLLDPLNSLASWDPSTPSAPCDWHGILCYNNNNRVHTIRLPRLQLTGSLTSSLSNLSQLRKLSLHSNNLNSSIPSSLSHCLFLRAIYLHNNSLSGNLPSSLLNLTNLQILNLARNFLSGTIPNHLSNSLRFLDLSSNSFSGDIPGNFSSKSQLQLINLSHNSFTGGIPVTVGALQHLEYLWLDNNHLHGTLPSAVANCSSMVHLSAEDNFIGGLIPSTVGTMPKLQVLSLSMNQLSGFVPTSLFCNEDNNRKNNNTNLRNVQLAFNRITGISNPQNGKCVNDFLEFLDLKENHIIHTLFPSWLTNVKSLRTLDLSGNSFSGSLPQDIGNLFLLEELKLSDNLLSGVVPSSIVKCRLLKVLDLQRNRFSGLIPYFLGELINLKELSLGGNFFTGSIPKSYGTLHELENLDLSNNKLNGILPFEIMQLGNMSVLNLSNNRFSGQVSSRIGDLMALQVLNLSQCGFSGSVPATLGNLMKLRVLDLSKQNLSGELPVEVFGLPSLEVVALDENHLSGSVPEGFSSIVSLSASASINHLVGNIVPSVISQLSRLKELNLGQNGLKGDIPDEISNCSSLNLLYLDGNHLTGHIPQSLSNLSSLKWLNLSSNQLTGEIPVDLSRISGLKYLNVSNNNLEGEIPEMLSSKFNDPSVYAMNKKLCGKPLHKECGKSKRRKRKKLIIIIGVAAAGLCLLALCCCGYVYSLLRWRKKLREGVTGEKKRSPTSAGSNGERNSRGSGENGGPKLIVFNNKITYAETLEATRNFDEENVLSRGKHGLVFKASYQDGMVLSIRRLPNGATLIDETTFRKEAESLGKVKHRNLTVLRGYYPGPPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLGYLHSVEIVHGDVKPQNVLFDADFEAHLSEFGLDRLTMVNLPGQIESAASSSSLTTAPVGSLGYVAPEAVLTGQVTKEGDIYSFGIVLLEILTGRKAVMFTQDEDIVKWVKKQLQKGLISELLEPGLLEIDQESSEWEEFLLGVKVALLCTAHDPLDRPSINDIVFMLEGCRVGPDIPSSADPTTLPSPVS 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00287 1111 PRINTS Leucine-rich repeat signature 639 652 - -
Tsu07g00287 1111 PRINTS Leucine-rich repeat signature 450 463 - -
Tsu07g00287 1111 Pfam Protein kinase domain 807 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g00287 1111 MobiDBLite consensus disorder prediction 756 785 - -
Tsu07g00287 1111 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 575 645 - -
Tsu07g00287 1111 SMART LRR_typ_2 219 243 IPR003591 -
Tsu07g00287 1111 SMART LRR_typ_2 591 615 IPR003591 -
Tsu07g00287 1111 SMART LRR_typ_2 543 566 IPR003591 -
Tsu07g00287 1111 SMART LRR_typ_2 447 470 IPR003591 -
Tsu07g00287 1111 SMART LRR_typ_2 351 375 IPR003591 -
Tsu07g00287 1111 SMART LRR_typ_2 471 495 IPR003591 -
Tsu07g00287 1111 SMART LRR_typ_2 639 663 IPR003591 -
Tsu07g00287 1111 SMART LRR_typ_2 267 291 IPR003591 -
Tsu07g00287 1111 SMART LRR_typ_2 149 173 IPR003591 -
Tsu07g00287 1111 SMART LRR_typ_2 101 125 IPR003591 -
Tsu07g00287 1111 PANTHER LRR RECEPTOR-LIKE KINASE 633 1106 - -
Tsu07g00287 1111 SUPERFAMILY Protein kinase-like (PK-like) 785 1099 IPR011009 -
Tsu07g00287 1111 Gene3D Ribonuclease Inhibitor 193 293 IPR032675 -
Tsu07g00287 1111 Gene3D Ribonuclease Inhibitor 570 711 IPR032675 -
Tsu07g00287 1111 Gene3D Ribonuclease Inhibitor 33 192 IPR032675 -
Tsu07g00287 1111 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Tsu07g00287 1111 PANTHER LRR RECEPTOR-LIKE KINASE 575 645 - -
Tsu07g00287 1111 Gene3D Ribonuclease Inhibitor 294 569 IPR032675 -
Tsu07g00287 1111 SMART serkin_6 805 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g00287 1111 SUPERFAMILY RNI-like 307 693 - -
Tsu07g00287 1111 PANTHER LRR RECEPTOR-LIKE KINASE 4 622 - -
Tsu07g00287 1111 MobiDBLite consensus disorder prediction 762 777 - -
Tsu07g00287 1111 SUPERFAMILY L domain-like 33 364 - -
Tsu07g00287 1111 Pfam Leucine Rich Repeat 151 172 IPR001611 GO:0005515
Tsu07g00287 1111 Pfam Leucine Rich Repeat 666 685 IPR001611 GO:0005515
Tsu07g00287 1111 ProSiteProfiles Leucine-rich repeat profile. 449 470 IPR001611 GO:0005515
Tsu07g00287 1111 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 633 1106 - -
Tsu07g00287 1111 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 622 - -
Tsu07g00287 1111 Gene3D Transferase(Phosphotransferase) domain 1 884 1095 - -
Tsu07g00287 1111 ProSiteProfiles Protein kinase domain profile. 805 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g00287 1111 Gene3D Phosphorylase Kinase; domain 1 781 883 - -
Tsu07g00287 1111 Pfam Leucine rich repeat 330 388 IPR001611 GO:0005515
Tsu07g00287 1111 Pfam Leucine rich repeat 580 628 IPR001611 GO:0005515
Tsu07g00287 1111 Pfam Leucine rich repeat 401 460 IPR001611 GO:0005515
Tsu07g00287 1111 Pfam Leucine rich repeat 173 232 IPR001611 GO:0005515
Tsu07g00287 1111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 928 940 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00287 Tsu-Chr7 2185713 2189372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00287 1 1111 Receptor kinase-like Gene Family AT1G75640 56.207 0.0 1203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Tsu07g00287 Pkinase 1.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00287 - - ghi:121230253 1195.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00287 07 2185713 2189372 Tsu07g00287 07 2185713 2189372 ECH