Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00266 ATGTCGATTCCAACCGAAgatcaaattcaacattttcctcaattcaatttcaatctaTTACATTCTCCTCCTTCTAACCCTTCTCCGTTTACTTTGAGTCAGAGAAATCAAATCAATAACACCAACCTGCACACTAGTAGCAATGTTGAAGCATTTCCCGGTCAGAGCAACCTAGTTAATCTTCCTCCTCCTATTCAAACTGAGCCTGTCCAAAGAGGAAAGAATAATGGTAAAGCAAAAGTTTCAAGAAATGGAAAATCCACGGCTCAGAATTCAAATACAGAAACTATGAATTCAACGGCAGTTAATAACTGTCGTTATGACAGTTCCTTAGGATTGTTAACCAAAAAATTTGTCACCTTGATCCAAGATGCCAAGGATGGTACGCTCGATCTAAATAAAACTGCTGAGGTCTTAGAGGTTCAAAAAAGGAGAATTTATGACATTACAAATGTTCTTGAGGGAATAGGGTTGATAGAGAAAACTTCAAAAAACCATATACGGTGGAAGGGATGTGATGGACTTGGGCCACGAGAACTGGAGGATCAAGTTAATGCTCTACAgGCTGAAGTTGAAAGTTTATATGCCGAGGAATGCAAAATTGAGGAGTGCATAAGTGAAAGGAAGGAGCTTATAAGAAACCTGGAGGAAGGTAAAAACACCGGAAAGTACCTTTTTGTATCCAAGGAAGATATTCTTACCCTTCCGGGGTTCCAGAATAAACAACTTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCCGATCCTGATGAGGAATTAGGCTTCCACCAAAGGCAGTACAGAATGATTATTAGAAGTGCAACTGGACCGATAAATTTGTACCTCTTGAACAAGCACGACAGCAAGGTTGAAGGTGTGAGTGTCAAGCAGGCAAAGTTAGAAGATCCATCGTGCAGTAGCAACCACTGCAGAATGGAGGGTGTGGGACTCTTAGAAGGCCAAGGTTTTCAGAAAAACGCTTCCGAGAGTTTAAGTTTGCTTGGCTCAGAGGCTTTTGGACTTCAACAAATTACTCCTACAGATTTGGATGTTGATGGTGACTATTGGTTTCAATCAGATCCCCAAGTTGGCCTAACAGAATTGTGGGGCACAAGTGCAGTTGGCTCAGATAGACAAACTTCTTAG 1155 0.4 MSIPTEDQIQHFPQFNFNLLHSPPSNPSPFTLSQRNQINNTNLHTSSNVEAFPGQSNLVNLPPPIQTEPVQRGKNNGKAKVSRNGKSTAQNSNTETMNSTAVNNCRYDSSLGLLTKKFVTLIQDAKDGTLDLNKTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGLGPRELEDQVNALQAEVESLYAEECKIEECISERKELIRNLEEGKNTGKYLFVSKEDILTLPGFQNKQLIAIKAPKASFIEVPDPDEELGFHQRQYRMIIRSATGPINLYLLNKHDSKVEGVSVKQAKLEDPSCSSNHCRMEGVGLLEGQGFQKNASESLSLLGSEAFGLQQITPTDLDVDGDYWFQSDPQVGLTELWGTSAVGSDRQTS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00266 384 Pfam E2F/DP family winged-helix DNA-binding domain 108 171 IPR003316 GO:0005667|GO:0006355
Tsu07g00266 384 SMART E2F_TDP_2 106 171 IPR003316 GO:0005667|GO:0006355
Tsu07g00266 384 PANTHER TRANSCRIPTION FACTOR E2F 30 374 IPR015633 GO:0000978|GO:0006357
Tsu07g00266 384 SUPERFAMILY E2F-DP heterodimerization region 182 288 IPR037241 -
Tsu07g00266 384 PANTHER TRANSCRIPTION FACTOR E2FC 30 374 - -
Tsu07g00266 384 Gene3D - 178 289 - -
Tsu07g00266 384 MobiDBLite consensus disorder prediction 62 97 - -
Tsu07g00266 384 CDD E2F_DD 182 289 IPR032198 GO:0046983
Tsu07g00266 384 SUPERFAMILY "Winged helix" DNA-binding domain 106 169 IPR036390 -
Tsu07g00266 384 Coils Coil 201 221 - -
Tsu07g00266 384 Pfam E2F transcription factor CC-MB domain 187 286 IPR032198 GO:0046983
Tsu07g00266 384 Gene3D - 101 173 IPR036388 -
Tsu07g00266 384 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00266 Tsu-Chr7 2031900 2035629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00266 74 372 E2F-DP Transcription Factor Family AT1G47870 50.993 4.24e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Tsu07g00266 E2F_CC-MB 4.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00266 K06620 - gmx:100797301 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00266 07 2031900 2035629 Tsu07g00266 07 2031900 2035629 ECH