Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00253 ATGGCTGTTCATACAAAATATCGTCTTATTACTTACTCACAAGAGATTGTAGATGGGCAGCCTATTTTTGTTTCGTCCAATTGTTTACCGGCTAAGGCGTTGAAATATGAGCCGGCAGGTCATTCTTTTCATTCAGCTGCACTTAAACTTATGGGTGTTAAGGAAGAAAAAGATAACAAAGATGATATTAAGAAAGTGGTTGGCGATAAGGAACAAGCTTATTTGCCATCGGATTCTTATAGCAGCAAGAGCAAAAAGAAAACTAAGGATGGAGAGAAGCAAGAACAGGATCACTATGCATTGATGGGTTTGAGTCATCTTAGGTATCTTGCGACCGATGAGCAAATTCGCAGAAGCTATCGTGAAGTTGCCTTGAAGTTTCATCCGGACAAACAAGCTGCCCTTCTTCTTGCTGAGGAAACTGAGGCTGCGAAGGAGGCTAAGAAAGTTGAAATAGAAACTCATTTCAAGGCAATCCAGGAGGCGTATGGAGTGTTGGTTGATCCCGTGAAAAGAAGAATTTACGATTCGACTGATGAGTGTGATGACGAGATTCCTACTGACTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGTCCAGCTTTTATGAGGAATGGACGGTGGTCGGTGAATCAACCAATTCCATCATTAGGTGATGATAAGACTTCAATAAAGGAAGTTGACAGTTTCTATGATTTTTGGTATTCCTTTAAAAGCTGGAGGGAGTTTCCCCAGGCTGATGAGTTTGATCTTGAGCAAGCTGAGAATCGAGACCATAAAAGGTGGATGGAAAGGCAGAATGCAAAACTGTCAGAAAAAGCTAGGAAGGAAGAGTATGCACGGATCCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCTAGAATATTGAGAAGAAAGGAAGAGATGAAGGCtgagaagaaaaggaaaaaggagTCCAAGTACTTGGCAAAGAAGTTGGAGGAGGAAGAAGCTGCCAGAATTGCTGAAGAGGAGAAAAAACGAAAAGCAGAGGAAGATAAAAAAGCTGCTGAAGCTGCTTTGCAACAGAAAAAGGTGAGGGAGAAAGAGAAAAAGCTCTTGCGGAAGGAGCGGACACGCCTTCGATCTCTCTCAGGACCTATCTCGTCAAAACACGTACTTGATATTTCTGACGATGATGTAGAGGAGATTTGCATGTCATTTGATATTGATCAGTTGAGGGGTTTGTGCGAGAAAATGGAAGGTAAAGAGCTGTTAGAGCAGGCAGAAGCTCTAAGAGATGCAGTGAGTAGCAAGAAACATACTGTTGATGAGAAAAGTAATCAACAAAATGGCTCTGTCAAGGCTAATGGAAGCATTAGTTCTCTAGCAGGCTACGcagagaagaaggagaaaccTTGGAGTAAAGAAGAGATTGAGCTATTGAGGAAAGGAGTGCAAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAAGTTGTTTCTGAATACATTGGCACTGGAAGATCTGTTGAAGAAATATTGAAAGCAACTAAAACCGTTCTCCTCCAGAAGCCCGATACAGCCAAAGCTTTTGACACATTTCTTGAGAAGAGGAAACCTGCTGCACAATCAATTGCATCTCCACTGTCAACCAGAGAAGAACTGGAAGGGGTATCAATACCAGCAACAACACCTGAAAACAGTGCTgcctcaacaacaacaacaataccAACGCCGGTGACAACGACAAAAACAACACCAACAGCACTGACGATGACGACAACTACAGCAACAACAAACAACACCAGCTCGGAAGGATCTCAAGGAGTTTCAGAACAGGAAAAGTGGTCTAAAGAGCAGGAAACAGCACTTGTTCAAGCTTTAAAAACCTTTCCAAAGGAAGCTAACCAGAGATGGGAACGAGTATCTGCAGCTGTACCTGGGAAGACTGTGATCCAGTGCAAGAAGAAAGTTGCCATGATGAAGGAAAATTTCAGGAACAAGAAAACTGCAGTTTGA 1980 0.4121 MAVHTKYRLITYSQEIVDGQPIFVSSNCLPAKALKYEPAGHSFHSAALKLMGVKEEKDNKDDIKKVVGDKEQAYLPSDSYSSKSKKKTKDGEKQEQDHYALMGLSHLRYLATDEQIRRSYREVALKFHPDKQAALLLAEETEAAKEAKKVEIETHFKAIQEAYGVLVDPVKRRIYDSTDECDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPSLGDDKTSIKEVDSFYDFWYSFKSWREFPQADEFDLEQAENRDHKRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRILRRKEEMKAEKKRKKESKYLAKKLEEEEAARIAEEEKKRKAEEDKKAAEAALQQKKVREKEKKLLRKERTRLRSLSGPISSKHVLDISDDDVEEICMSFDIDQLRGLCEKMEGKELLEQAEALRDAVSSKKHTVDEKSNQQNGSVKANGSISSLAGYAEKKEKPWSKEEIELLRKGVQKFPKGTSRRWEVVSEYIGTGRSVEEILKATKTVLLQKPDTAKAFDTFLEKRKPAAQSIASPLSTREELEGVSIPATTPENSAASTTTTIPTPVTTTKTTPTALTMTTTTATTNNTSSEGSQGVSEQEKWSKEQETALVQALKTFPKEANQRWERVSAAVPGKTVIQCKKKVAMMKENFRNKKTAV 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00253 659 CDD SANT 602 644 IPR001005 -
Tsu07g00253 659 Pfam Myb-like DNA-binding domain 459 500 IPR001005 -
Tsu07g00253 659 ProSiteProfiles Myb-like domain profile. 602 644 IPR001005 -
Tsu07g00253 659 SUPERFAMILY Homeodomain-like 459 502 IPR009057 -
Tsu07g00253 659 PRINTS DnaJ domain signature 102 120 IPR001623 -
Tsu07g00253 659 PRINTS DnaJ domain signature 120 135 IPR001623 -
Tsu07g00253 659 PRINTS DnaJ domain signature 151 171 IPR001623 -
Tsu07g00253 659 Pfam DnaJ domain 97 176 IPR001623 -
Tsu07g00253 659 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 1 656 - -
Tsu07g00253 659 CDD DnaJ 97 168 IPR001623 -
Tsu07g00253 659 SUPERFAMILY Homeodomain-like 601 655 IPR009057 -
Tsu07g00253 659 MobiDBLite consensus disorder prediction 424 444 - -
Tsu07g00253 659 Gene3D DnaJ domain 80 188 IPR036869 -
Tsu07g00253 659 Coils Coil 303 364 - -
Tsu07g00253 659 CDD SANT 460 500 IPR001005 -
Tsu07g00253 659 SMART sant 457 510 IPR001005 -
Tsu07g00253 659 SMART sant 599 651 IPR001005 -
Tsu07g00253 659 ProSiteProfiles dnaJ domain profile. 97 179 IPR001623 -
Tsu07g00253 659 MobiDBLite consensus disorder prediction 549 572 - -
Tsu07g00253 659 Gene3D - 595 659 - -
Tsu07g00253 659 Gene3D - 454 511 - -
Tsu07g00253 659 SMART dnaj_3 96 171 IPR001623 -
Tsu07g00253 659 ProSiteProfiles Myb-like domain profile. 453 508 IPR001005 -
Tsu07g00253 659 SUPERFAMILY Chaperone J-domain 91 175 IPR036869 -
Tsu07g00253 659 MobiDBLite consensus disorder prediction 332 358 - -
Tsu07g00253 659 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 656 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00253 Tsu-Chr7 1948676 1950655 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00253 98 297 C2H2 Transcription Factor Family AT1G74250 26.360 2.89e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g00253 DnaJ 4.6e-16 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00253 K09522 - gmx:100814414 818.15