Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00241 ATGGTTACGTCCGCAGCTGATTCTTCCGCTATTAACCCTGCCGCCACCAATACCCCTAATTTCCCGCGAAAAAACCTAACTTCTCCGTGGGCACAGGTTGTTCGCGGTGCTGATTCCGAACCACTCAATAATCAATCGTCTCCACCGCAGCCACAGCAGCCGCagtcttcttcatcatcatcgtctCTCGATTCGGCCAATTTAGTTGCTGCCGCTGCTGCTATTACTGCTGTTGTTGCAATTGCCGCACATAACTCCAATGCTGATcagaataataacaacaacaacaatgcaGGTAACCCTAAGAAACCCGCTTGGAAGAATGCATCCAATGGCGTTGTTGCTGAGGTGAGTCCTGTCATGGGTGCTGTCTCTTGGCCCGCTTTATCAGCTAAGAGTTCTGCTAAATTCACATCTGATCCCTCCTCCGCCGTCATGGTCGCCGAAGGATCAATCTCCATTCCGCAGGGACCTATTACTTCACATTCCCCTCGTAAACAGGCCACTACCACGACTAATGCTAATGCGAAACCTACACCTCCAATTAATCACGGTGTGGCAAATAGACAAAAACCAATAAAGCGCGGAGGAGGCAATAGTAGCTGCAATGAGCCTGCTCCTTTTCCAAATAGTTTCTCTAATCCTCCTCATGTTAATCTTCAACCATCAGCTGCTCCTCCACCATATCCAGTGGTTCAGATTCCTCCTACCTTTGCTGACGGGGTTCAGTCGTACAGAAACAACAATAGCTGGAGTCCAAGATCACCCGTTGGGGGTTATGGGTTGCCGGTGGATGAGCATAGGAATGCCTCTCGCAGGGGTAATTATGGGAACCGTCCACATAACAATTCCGGCATTAGACGCAACCAGGATCCTCTTAGGGATGCTCATGCACATCAACATAGGATGCACTCAGGGGGATTTTTGAGGCCTACACTACCGAATTCTCCTTCATATTTAGGGTCTCCGTCCATAAGACCCTTTGTAAACACTTTTGGATTTCATGAATTATATTATTATCCTACGCTACAATTTGAACAATTTGGAGGTATGCCAGTCTTGACGCATCCACCGCCTCCTGCGATGTTCTTTCCAGTTCCAGAAACTCTTGAATCTCCTGCAGAAACAACTCCCGCAGAAACTCCCTTGACCAGTTTAATACTCAAGCAAATTGAGTATTATTTTAGTGATGTTAATTTAGCGAACGATGACTTTCTGAAGTTCAACATGGACGAACAGGGTTGGGTTCCAATTACTTTGATCGCAAACTTCCCCCGAGTGAAAAAGTTGACAAACAACATTGAGTTGATTTTGGATTCCTTGAGAACTTCAAAAGTTGTGGAAgtgcatGGTGATAAGATGAGGAGGCGTAATGAGTTGATGAGATGTTTGCCCTCTGCACACCAACACCAACTTGCTAGTTCTGGTTCAGTATCCCCAAGCGGATCAAGTTGTAGTAACATAGTTGCTGATTTCGATAAGATTACTTTGGACGAAGCAACTGGCCATAGAATTTCCAATGCTACCACAAACGTGGGTTCTGCATGA 1548 0.4477 MVTSAADSSAINPAATNTPNFPRKNLTSPWAQVVRGADSEPLNNQSSPPQPQQPQSSSSSSSLDSANLVAAAAAITAVVAIAAHNSNADQNNNNNNNAGNPKKPAWKNASNGVVAEVSPVMGAVSWPALSAKSSAKFTSDPSSAVMVAEGSISIPQGPITSHSPRKQATTTTNANAKPTPPINHGVANRQKPIKRGGGNSSCNEPAPFPNSFSNPPHVNLQPSAAPPPYPVVQIPPTFADGVQSYRNNNSWSPRSPVGGYGLPVDEHRNASRRGNYGNRPHNNSGIRRNQDPLRDAHAHQHRMHSGGFLRPTLPNSPSYLGSPSIRPFVNTFGFHELYYYPTLQFEQFGGMPVLTHPPPPAMFFPVPETLESPAETTPAETPLTSLILKQIEYYFSDVNLANDDFLKFNMDEQGWVPITLIANFPRVKKLTNNIELILDSLRTSKVVEVHGDKMRRRNELMRCLPSAHQHQLASSGSVSPSGSSCSNIVADFDKITLDEATGHRISNATTNVGSA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00241 515 PANTHER LA-RELATED PROTEIN 1B 42 506 - -
Tsu07g00241 515 Pfam La domain 387 442 IPR006630 -
Tsu07g00241 515 MobiDBLite consensus disorder prediction 87 107 - -
Tsu07g00241 515 CDD LAM 387 457 - -
Tsu07g00241 515 PANTHER LUPUS LA PROTEIN-RELATED 42 506 IPR045180 -
Tsu07g00241 515 MobiDBLite consensus disorder prediction 240 255 - -
Tsu07g00241 515 MobiDBLite consensus disorder prediction 38 64 - -
Tsu07g00241 515 SUPERFAMILY "Winged helix" DNA-binding domain 378 464 IPR036390 -
Tsu07g00241 515 MobiDBLite consensus disorder prediction 288 302 - -
Tsu07g00241 515 Gene3D - 373 467 IPR036388 -
Tsu07g00241 515 MobiDBLite consensus disorder prediction 203 219 - -
Tsu07g00241 515 MobiDBLite consensus disorder prediction 220 234 - -
Tsu07g00241 515 MobiDBLite consensus disorder prediction 155 179 - -
Tsu07g00241 515 MobiDBLite consensus disorder prediction 1 64 - -
Tsu07g00241 515 MobiDBLite consensus disorder prediction 1 27 - -
Tsu07g00241 515 MobiDBLite consensus disorder prediction 155 310 - -
Tsu07g00241 515 MobiDBLite consensus disorder prediction 87 104 - -
Tsu07g00241 515 ProSiteProfiles La-type HTH domain profile. 377 466 IPR006630 -
Tsu07g00241 515 SMART la 381 459 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00241 Tsu-Chr7 1802335 1806641 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00241 K18757 - gmx:100775279 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00241 07 1802335 1806641 Tsu07g00241 07 1802335 1806641 ECH
Tsu01g00176 01 1352624 1357012 Tsu07g00241 07 1802335 1806641 PCT