Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00238 ATGACTCAAGATCTCGAGATGAAGGATCGTTCTACTCCTTCCAACACTGTTTCTCCACCCGTTCCATCTACTCTACAGCATTTGAAGGAGATAGCATCTCTTATCGAGACTGGTTCGTATTCGAAAGAAGTTCGTAGAATTGCTCGTGCTATTCGTCTTACAATTGCATTGAGGAAGAAATTGACAGCTTCGGTTATTTCATCTTTTCTTGATCATGTTCTCACTCCTGGTTCTGAGCCTCATGCCAAATTGTCTGCGTATCTTCCCAAGGAGGATGATCATGAGATGGAAGTGGATGCTGCAACGTCTGTCATTCAAACCCCTACAACTAAACATGTGTTGCCTGAGATAGAAATTTTCTGTTACCTGCTTGTACTACTTTTTCTGATTGATCAGAAAAAATACAATGAGGCCAAAGCTTGTTCCTCAGCTAGTGTTGCTTGGCTGAAGAATGTGAACAGAAGAACGGTTGATGTTATTGCATCCAgactatttttttactattcatATAGCCATGAACTTACAGGAGATCTCGCTGAAATTCGGGGCAACCTCCTTGCCTTGCACCGGATCGCTACCCTGCGCCATGACGAGTTGGGTCAGGAAACCCTTCTTAATTTGTTACTTCGCAACTATCTTCACTACAACCTGTATGACCAGGCAGAGAAGTTGAGGTCAAAGGCTCCACGATTTGAAGCTCATTCAAACCAACAGTTCTGTCGTTATCTCTTCTACCTCGGGAAAATCCGGACAATTCAATTGGAGTATACAGATGCAAAAGAGTCTCTCCTGCAGGCTGCTCGTAAAGCTCCAGTTGCAGCTCGAGGTTTTCGAATTCAATGTAACAAGTGGGCTATCATAGTGCGTTTACTGTTGGGAGAAATACCTGAACGGACTGTCTTTATGCAGAAGGGAATGGAGAAAGCATTGAGGCCTTACTTTGAGCTTACAAATGCTGTCCGCATTGGAGACTTGGAGCTGTTTAGGAACATTGCAGATAAGTTTGCAACCACCTTCAGTGCAGACGGAACTCATAATTTGATTGTTCGCCTGCGGCATAATGTCATCAGGACCGGTTTGCGTAACATCAGCATCTCCTACTCTCGCATCTCACTAGCTGATGTTGCTAAAAAATTGAGGTTGGACTCACCAAATCCTATTGCTGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGGGCAATTGATGCTACATTGGATCATGCAAATGGGTGGATGGTGTCTAAGGAAACCGGAGATATTTACTCCACTAACGAGCCTCAGCTGGCTTTTAATTCTCGGATTGCCTTTTGTCTTAACATGCATAATGAAGCTGTTAGAGCACTTCGTTTTCCACCAAATACacacaaagaaaaagaaagtgctgaaaagagaagagagagacaACAGCAAGAGCAAGAACTTGCCAAGCATATTGCAgaggaggatgatgatgatttctGA 1467 0.4138 MTQDLEMKDRSTPSNTVSPPVPSTLQHLKEIASLIETGSYSKEVRRIARAIRLTIALRKKLTASVISSFLDHVLTPGSEPHAKLSAYLPKEDDHEMEVDAATSVIQTPTTKHVLPEIEIFCYLLVLLFLIDQKKYNEAKACSSASVAWLKNVNRRTVDVIASRLFFYYSYSHELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFSADGTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSPNPIADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00238 488 Pfam PCI domain 312 417 IPR000717 -
Tsu07g00238 488 SMART PINT_4 346 439 IPR000717 -
Tsu07g00238 488 MobiDBLite consensus disorder prediction 453 488 - -
Tsu07g00238 488 MobiDBLite consensus disorder prediction 453 481 - -
Tsu07g00238 488 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 488 - -
Tsu07g00238 488 SUPERFAMILY "Winged helix" DNA-binding domain 347 422 IPR036390 -
Tsu07g00238 488 Gene3D - 118 437 - -
Tsu07g00238 488 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 488 - -
Tsu07g00238 488 ProSiteProfiles PCI domain profile. 240 421 IPR000717 -
Tsu07g00238 488 MobiDBLite consensus disorder prediction 1 21 - -
Tsu07g00238 488 Pfam Proteasome regulatory subunit C-terminal 421 487 IPR013586 GO:0000502|GO:0030234|GO:0042176
Tsu07g00238 488 Coils Coil 455 482 - -
Tsu07g00238 488 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 346 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00238 Tsu-Chr7 1789004 1793708 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00238 K03033 - gmx:100814379 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00238 07 1789004 1793708 Tsu07g00238 07 1789004 1793708 ECH
Tsu01g00171 01 1327621 1333109 Tsu07g00238 07 1789004 1793708 PCT