Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00237 aTGATGCTTGATTCAGTTCTTTTCGCGCTTTTTCTTCCTTGTTTAGGAATGAGTGCAATTTTCGTCGTTTACATGTGTCTTTTATGGTGCACCACCACTCGTAACAACAACCGTTCTGATGGTACACCACCGATTAAACCGGTCACTCATACGGGTCTTTCCCCTTTAGATCTTGAAAAACTACCTAAAATCACCGGTAAAGAATTAGTTACGGTCACCGAATGCGCCGTTTGCCTCGACGAAATCGACGATGAACAACCGGCTCGACTGATTCCCGGTTGTAATCACGCTTTTCATGTCCATTGTGCTGACACGTGGCTCTCTAAACATCCTATTTGTCCACTCTGTAGAACTAAACTCGACCCTCAGATTCTCAATTCTGAAAGCCCCTGCTAG 396 0.447 MMLDSVLFALFLPCLGMSAIFVVYMCLLWCTTTRNNNRSDGTPPIKPVTHTGLSPLDLEKLPKITGKELVTVTECAVCLDEIDDEQPARLIPGCNHAFHVHCADTWLSKHPICPLCRTKLDPQILNSESPC 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00237 131 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 2 128 - -
Tsu07g00237 131 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 2 128 - -
Tsu07g00237 131 ProSiteProfiles Zinc finger RING-type profile. 75 117 IPR001841 -
Tsu07g00237 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 123 IPR013083 -
Tsu07g00237 131 SUPERFAMILY RING/U-box 74 123 - -
Tsu07g00237 131 SMART ring_2 75 116 IPR001841 -
Tsu07g00237 131 Pfam Ring finger domain 74 117 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00237 Tsu-Chr7 1784636 1785520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00237 2 131 C3H Transcription Factor Family AT5G42200 52.941 3.02e-49 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00237 K19037 - gmx:100811160 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00237 07 1784636 1785520 Tsu07g00237 07 1784636 1785520 ECH
Tsu01g00169 01 1319115 1319504 Tsu07g00237 07 1784636 1785520 PCT