Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00227 ATGACTCCTCAGAAATCAGACTCCGTCGTTGTTTACCTTCACGGTAACCTCGATTTAAAAATCGTTGAGGCTCGTTATTTACCAAACATGGACATGTTTTCAGAGCGTTTACGAAGATTCTTCTCCGCTATTAATAAATGCAGCAATTCAATCAgtggtaaaaacaaaaaccatCCGCCACGTCATCATCACCATAAAATAATCACCAGTGATCCATACGTAACCGTTTGTCTTGCCGGTGCTACGGTGGCGCGTACGCGCGTTATTTCAAATTCGCAATCACCTAAATGGGAAGAGCATTTTAAGATTCCTTTGGCTCATCCTGTTTCTCAGGTTGAATTCTATGTGAAAGATAATGACATGTTTGGTGCTGATTTAATCGGAATCGCAACCGTTTCTGCTAAGAGGATTTTATCAGGTGAAGCTATAAGTGATTGGTTTCCGATTATAGGTTCTAGTGGTAAACCTCCAAAACCTGATTGCGCGGTTTTTCTTGAGATGAAATTCACCAGGTGCGATGACAATCCTCTTTACAGTTCCGGCATTGGGCCTGATATTGAGAGGTTTTCGGTTCGGGATTCGTATTTTCCGGTTCGGAAAGGAGGATCGGTGACGTTGTATCAAGATGCGCATGTTCCGGATTCGATGTTGCCGGGGATTGAATTGGATGATGGTGTTGAATTTCAGCAGGGGAAGTGTTGGGAAGATATCTGTCATGCAATATTGGAAGCACATCATATGGTGTATATTGTTGGTTGGTCAATTTACCATAAGGTGAAGCTAGTTAGAGAACCAACAAAACCATTACCAAGTGGTGGAAATTTGAATTTGGGGGAATTACTCAAGTATAAATCACAAGAAGGTTTGCGAGTTTTACTGTTGGTTTGGGATGATAAAACTTCACACAGCAAATTTTTCATCAATACgAATGGAATAATGCAGACTCATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTACATGTGTGTTATCACCACGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAGCAGGCATGCTTTATGCTATGGTTTAGTAGCTTTCCtagacttttttatGTTGTCGGAACGCTTTTTACGCATCATCAGAAATGTGTGATCGTTGATACCCAAGCACATGGCAATAATCGGAAGATAACCGCGTTTATAGGTGGTCTTGATCTTTGTGATGGCCGTTATGATACACCAGAGCATAGACTTTTCCGTGATCTTGACACTGTTTATAAGGATGATTTTCATAATCCGACATTTTCGGAAGGAACCAAGGGTCCAAGGCAACCATGGCATGACCTACATTGCAAAATAGAAGGGCCCGCTGCATATGATATACTCGCTAATTTTGAGCAGCGCTGGAAGAAAGCCACCAAATGGTCTGAGTTGggtcaaaaattcaaaagagTATCTCACTGGCACGATGATTCTTTGATTAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGAATCAGTGCCAAATGATGATCCTGAATTATGGGTTTCAAAGGACGATGACCCTGAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCAGGCTCTTTGAAAGGATTTCCTAAGAATACATATGAAGCTGGAGCTCAGAATCTTGTTTGTGCTAAAAATTTGGTCATAGACAAGAGTATTCAAACAGCTTACATACATGCCATCAGATCCGCTCAGCATTTTATCTATATCGAGAATCAATACTTCATCGGATCATCCTTTGCTTGGCCATCTTACAAAGAAGCAGGTGCTGATAACTTAATCCCAATGGAGTTGGCGCTGAAGATTGTCAGTAAGATCAGATCACGGGAGAGATTTGCTGTCTATATTGTCATTCCAATGTGGCCTGAAGGCGTCCCTTCTTCTGCCGCCGTGCAAGAAATGCTCTATTTTCAGGGACAAACTATGCAAATGATGTATGAAATCATAGCTCGGGAATTAAAATTTATGAAACTTGACAATAGCCATCCACAAGATTACCTCAATTTTTACTGTCTTGGTAACAGAGAGAAGTTTCCAACTGAAGTTTCAATTCCAAGGAATCCACCTTGTGACAATGGCGACACGGTTTCAGCTTCACAAAAGTTCCAACGATTTATGATTTATGTACATGCCAAAGGAATGGTTGTGGATGATGAATATGTGATAGTTGGGTCTGCCAATATCAATCAACGATCTTTGGCTGGCTCAAGAGATACCGAGATAGCAATGGGTGCATATCAACCCCGTCACACATGGAACAAGAAAAAGGGACATCCTCATGGCCAGGTATATGGGTATAGAATGTCCTTGTGGGCAGAGCACTTAGGGACCATATATGACTGCTTCAAGGAGCCTGAAAGTTTGGATTGTGTGGAGAATGTGAACAAGATTGCTAAAGAAAACTGGAAAAAGTATACATCTGATGATTTTAAGCCATTGCAAGGGCACATTCTGAAGTATCCCATCAAAGTGAATGTACATGGGAAAGTAACCTCTTTACCTGGATTTGAGTATTTCCCAGATGTCGGTGGCAAGGTGCTTGGTTGCCGTTCTACCTTTCCCGATGCTCTAACTACATAG 2598 0.4057 MTPQKSDSVVVYLHGNLDLKIVEARYLPNMDMFSERLRRFFSAINKCSNSISGKNKNHPPRHHHHKIITSDPYVTVCLAGATVARTRVISNSQSPKWEEHFKIPLAHPVSQVEFYVKDNDMFGADLIGIATVSAKRILSGEAISDWFPIIGSSGKPPKPDCAVFLEMKFTRCDDNPLYSSGIGPDIERFSVRDSYFPVRKGGSVTLYQDAHVPDSMLPGIELDDGVEFQQGKCWEDICHAILEAHHMVYIVGWSIYHKVKLVREPTKPLPSGGNLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTNGIMQTHDEETRKFFKHSSVTCVLSPRYASSKLSIFKQQACFMLWFSSFPRLFYVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVYKDDFHNPTFSEGTKGPRQPWHDLHCKIEGPAAYDILANFEQRWKKATKWSELGQKFKRVSHWHDDSLIKLERISWILSPSESVPNDDPELWVSKDDDPENWHVQVFRSIDSGSLKGFPKNTYEAGAQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFIGSSFAWPSYKEAGADNLIPMELALKIVSKIRSRERFAVYIVIPMWPEGVPSSAAVQEMLYFQGQTMQMMYEIIARELKFMKLDNSHPQDYLNFYCLGNREKFPTEVSIPRNPPCDNGDTVSASQKFQRFMIYVHAKGMVVDDEYVIVGSANINQRSLAGSRDTEIAMGAYQPRHTWNKKKGHPHGQVYGYRMSLWAEHLGTIYDCFKEPESLDCVENVNKIAKENWKKYTSDDFKPLQGHILKYPIKVNVHGKVTSLPGFEYFPDVGGKVLGCRSTFPDALTT 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00227 865 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 169 IPR035892 -
Tsu07g00227 865 Gene3D Endonuclease Chain A 226 485 - -
Tsu07g00227 865 PANTHER PHOSPHOLIPASE D 9 864 IPR015679 -
Tsu07g00227 865 Pfam C2 domain 15 149 IPR000008 -
Tsu07g00227 865 Gene3D C2 domain 10 169 IPR035892 -
Tsu07g00227 865 Pfam Phospholipase D C terminal 786 855 IPR024632 -
Tsu07g00227 865 SMART C2_3c 16 146 IPR000008 -
Tsu07g00227 865 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 367 402 IPR001736 GO:0003824
Tsu07g00227 865 ProSiteProfiles C2 domain profile. 1 147 IPR000008 -
Tsu07g00227 865 Gene3D Endonuclease Chain A 531 760 - -
Tsu07g00227 865 CDD C2_plant_PLD 10 170 - -
Tsu07g00227 865 SUPERFAMILY Phospholipase D/nuclease 193 473 - -
Tsu07g00227 865 Pfam Phospholipase D Active site motif 368 402 IPR001736 GO:0003824
Tsu07g00227 865 Pfam Phospholipase D Active site motif 712 738 IPR001736 GO:0003824
Tsu07g00227 865 PANTHER PHOSPHOLIPASE D 9 864 - -
Tsu07g00227 865 SUPERFAMILY Phospholipase D/nuclease 559 797 - -
Tsu07g00227 865 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 711 738 IPR001736 GO:0003824
Tsu07g00227 865 PIRSF PLD_plant 2 865 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Tsu07g00227 865 SMART pld_4 367 402 IPR001736 GO:0003824
Tsu07g00227 865 SMART pld_4 711 738 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00227 Tsu-Chr7 1704584 1712742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00227 4 702 Phospholipase D Gene Family (Wang group) AT4G35790 65.132 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00227 K01115 - gmx:100795859 1492.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00227 07 1704584 1712742 Tsu07g00227 07 1704584 1712742 ECH