Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00221 ATGTCATCGGAAGCAAAAAGCAATGTCTCCGGCGGTGACGAAGGAAAACACTATCCTCCTCCACTCGCTTCTCACAACGACATCATCAATGACTCTACTCTCTTCTGGAACACTCTTCGTCACTTTCACTTTCTCATGACTACTAAATTCATGATTCCTGTTATTGGAGGTAAGGAGCTAGATTTGCACGTTCTTTACGTGGAAGTTACAAGGAGAAGCGGTTATGAGAAGGTAGTTGTGGAGAAAAAATGGAGAGAAGTAGGTAGTGTATTTAGATTCTCATCTACAACTACAAGTGCTTCATTTGTACTAAGAAAACATTACTTGAATCTTCTTTACCATTACGAACAAGTTCACTTCTTCAAAGTTCAGGGTCCTATATTCTTTCCCTCAGCAGATGCGTTTTCTGGAAATAGTCCCTCGTGGCGACCTGAATTGGCCATTGTTCAATATTCACCTAAGATGGTAAATGATAGTGCTGAATCTCATGATGAAGTGAATGTAGATAGTTCATGTCTTTTGGGAAAAGGAACAATAGAAGGAAAATTTGATTGTGGTTATATAGTATCGGTGAAATTGGGTTCAGAGGTTCTCAAAGGGGTGCTTTATCATCCAGAACAAGTGGTTGCTACTCCATCATTGGTTCCACAACATGCTATTGTACCATTCAATCTTCAATCTCATAGTTCTGGTAggaggaagagaagaaaaagaaagtgggACCCAAACTATCCAAAACCAAATAGGAGTGGCTATAACTTTTTCTTTGCTGAAAAACATTACAAGCTCAAAGAACTCTACCCAAACAGAGAAAGGGAATTTACTAAAATGATTGGTCAATCCTGGAATAGTCTTAGCCCTGAAGAAAGAATGATTTACCAAAACATTGGCTTAAGGGACAAAGAAAGGTATAAAAGAGAATTGACAGAGTACAAAGAGAAAATGAAGGTTGGGCAGACTGAAGAACTTGGGCTTCCATAA 981 0.3772 MSSEAKSNVSGGDEGKHYPPPLASHNDIINDSTLFWNTLRHFHFLMTTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVVEKKWREVGSVFRFSSTTTSASFVLRKHYLNLLYHYEQVHFFKVQGPIFFPSADAFSGNSPSWRPELAIVQYSPKMVNDSAESHDEVNVDSSCLLGKGTIEGKFDCGYIVSVKLGSEVLKGVLYHPEQVVATPSLVPQHAIVPFNLQSHSSGRRKRRKRKWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNSLSPEERMIYQNIGLRDKERYKRELTEYKEKMKVGQTEELGLP 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00221 326 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Tsu07g00221 326 Pfam HMG (high mobility group) box 245 312 IPR009071 -
Tsu07g00221 326 MobiDBLite consensus disorder prediction 226 245 - -
Tsu07g00221 326 CDD HMGB-UBF_HMG-box 245 308 - -
Tsu07g00221 326 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677
Tsu07g00221 326 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Tsu07g00221 326 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 245 312 IPR009071 -
Tsu07g00221 326 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 321 - -
Tsu07g00221 326 SUPERFAMILY HMG-box 242 315 IPR036910 -
Tsu07g00221 326 Gene3D - 23 125 IPR036431 GO:0003677
Tsu07g00221 326 SMART hmgende2 244 313 IPR009071 -
Tsu07g00221 326 SMART ARID_2 26 116 - -
Tsu07g00221 326 Coils Coil 301 321 - -
Tsu07g00221 326 Gene3D High mobility group box domain 228 323 IPR036910 -
Tsu07g00221 326 SUPERFAMILY ARID-like 27 126 IPR036431 GO:0003677
Tsu07g00221 326 MobiDBLite consensus disorder prediction 1 22 - -
Tsu07g00221 326 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 321 - -
Tsu07g00221 326 SMART bright_3 30 121 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00221 Tsu-Chr7 1647346 1649430 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00221 16 317 ARID Transcription Factor Family AT1G76110 63.226 4.81e-133 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tsu07g00221 ARID 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00221 - - gmx:100784746 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00221 07 1647346 1649430 Tsu07g00221 07 1647346 1649430 ECH