Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00186 ATGGGAGATGGTGCTGCAGTGACATCATCTGCAACCATGATGGAAGGTCCATCACAAGATGAAAATTCAATGGATTTTGATTACATGAGTGAACTTTTATTAGATGGATGTTGGTTGGAAGCTTCTGCTGATGGATCTGAGTTCTTGCTGCAAAGTTCTCCTTTTTCCAATCCAATCTTTGACCCTTCATTCTCTTGGCCTTCCTTGGAGAATACTGAGCCAACCCGTAATGAGGATGGGCACGTTGGTGTTGAACAAGAAAGTCAGATTATAGTTAATAATGCTGGTAGTAGTGACCGGCAGCAGTGTGAGTTTGAGACTCGTTCGGGTGAAGGGGTTAGTAGGTTGTGGATTCCACCGACGCCTAATCCAGGACTTGGCGGATCTTCCATAACGGAGAAGCTGATAAGGGCTCTCAAGTGGATCAAAGATTTCAATAGGAACAAAGATATGCTTATACAAATATGGGTGCCGGTTAATAGAGGGGATGATAGGCCAATTCTGAGAGCTAATGATCTTCCTTTTTCACTTGAATCAAGGTCTTTGAACCTTGCAAAGTACCGAGAGATTTCTGTGAGATATCAGTTTTCTGCAGAGGAGAAGGACTCGAAGGAGTTGGTGGCGGGTTTGCCCGGTCGAGTTTATAGGGATAAGATTCCTGAGTGGACGCCTGATGTTCGATTCTTCAGGAGTGAAGAGTATCCGCGAGTTGACCATGCTCAAGAGTGTGATATACACGGAACATTAGCGGTTCCGGTGTTTGAACAAGGGAGCAGGACATGTTTGGGCGTTATTGAAGTGGTCATGACTACACAGCAGAGCAACTATGGCCGTGAACTTGAGACTGTTTGCAAAGCGCTCGAGGTTGTTGATCTCAGAAGCTCTGGACATTCAAGTCTTCAGAATGTGAAGCAGGCGTGCGACAAATCCTACGAAACTGCACTACCTGAGATTCAAGAGGTTTTGAGATCTGCATGTGAAATGCACAAATTACCTTTGGCTCAGACTTGGATCTCATGCATCCAACAGGGAAAAGACGGGTGCCGGCACTCTGATGATAATTATGCAAACTGTATATCTCCGGTGGATTATGCGTGCTATGTTGGGGATTCCTCAGTTAGGTTTTTTCACGAGGCTTGCATGGAGCATCACTTGTTAAAAGGTCAAGGTGTTGCCGGGGGTGCTTTCGTGACAAACCAACCATGCTTCTCAGCTGACATAACTTCTTTAAGCAAGACAGATTATCCATTGTCTCATCATGCCAGGTTGTTTGGATTGCGGGCTGCAGTTGCCATACGACTCCGAAGCATCTATAGTACTTCAGATGACTATGTTCTCGAGTTCTTCTTGCCTGTAGATTGCAATGACATTGAAGAACAGAAAAATATGCTCACATCTTTGTCCATGATTATTCAAAGGGTTTGCCGCAGCTTGCGAGTTATAACAGATAAGGAATTGGATAAAGATCACTTATCATCTAATGAAGTGATGGCCGTTACTGATGGTCAATTTGCTACAAATGCAGTTTGGTCGGAATCTCAACACAGGGGGATGGCTGCCTCATTGGGCGGTGAAGAAAAGTTTAGTGAAACAATGGGTAGAAAATTCTCGGAACAAAGGCGGCAACAGGAAACTCTTACTTTAAAAGGAGATCTTGATTGTGGTAGGGTGCGTTCTCCTTCTGTGGAGGGTACTTTCTTGTCAAGTTTGGGAATAAATAGAACTGGAGAGAAAAGACGGGCTAAGGCAGAAAAAACTATCACTCTTCAAGTCCTTAGGCAATATTTCGCTGGAAGTCTAAAAGATGCTGCGAAAAATATTGGCGTCTGTACTACAACTCTGAAAAGGATCTGCAGACAACATGGTATAAAGCGCTGGCCTTCTCGGAAGATAAAAAAGGTTGGCCACTCCTTGCAGAAACTTCAACTCGTCATTGACTCGGTTCAGGGTGCCTCTGGTTCATTTCAAATTGATTCCTTCTATTCAAAGTTCTCTGATCTATCGTCTCCAAGAACCAGCCTAATCTCAACTCTGAATCAAATTGATAATCAAGTCTCATTAAGCACACTGCCAGATCCCGACTCATTAAGCCCTGAAGGTGCATCGAAATCACCCTCATCTTCATGTAGTCAAAGTTCATTTTCAAGCCATTCTTGTTCCAGCATGTCGGAGCAACAACACCACAAAGGCGATGTTGCTGCTGGTAACAAAGATCCATCTGTTGGTGAAGATTCCGTTGATGTTGTATTGAAGAGAATCAGAAGTGAAGCAGAACTTAAAAGCCTGATTCAAGATAATAAAACAAAGCTCATGCCAAGATCACAAAGTCAGGAAACACTAGGCGAAAACCCGAAAACCGAGCATCACAAATCCTTATTAAAAACCGCTCGCAAAGCGTCTCAAAAGGAGGATTCTCATAGAGTAAAAGTTACATTTGGAGATGAGAAAACCCGGTTTAGGTTGCCAAAGAAATGGGGTTATGAAGATCTTGTGCAGGAAATTGCTAGGAGATTTAATGTAAGTGAAATGAGCAAATTCGATATCAAATATTTGGACGATGATTACGAATGGGTATTACTAACTTGTGATGCAGATTTGGAGGAGTGCATTGATGTTTCTCAATCTTCTGAGACTAGTACCATCAAACTTTGTCTGCAACCCTCCAGTAATTTTATCAGAAGTTCTTTAGAATTTAGATAG 2700 0.4293 MGDGAAVTSSATMMEGPSQDENSMDFDYMSELLLDGCWLEASADGSEFLLQSSPFSNPIFDPSFSWPSLENTEPTRNEDGHVGVEQESQIIVNNAGSSDRQQCEFETRSGEGVSRLWIPPTPNPGLGGSSITEKLIRALKWIKDFNRNKDMLIQIWVPVNRGDDRPILRANDLPFSLESRSLNLAKYREISVRYQFSAEEKDSKELVAGLPGRVYRDKIPEWTPDVRFFRSEEYPRVDHAQECDIHGTLAVPVFEQGSRTCLGVIEVVMTTQQSNYGRELETVCKALEVVDLRSSGHSSLQNVKQACDKSYETALPEIQEVLRSACEMHKLPLAQTWISCIQQGKDGCRHSDDNYANCISPVDYACYVGDSSVRFFHEACMEHHLLKGQGVAGGAFVTNQPCFSADITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYSTSDDYVLEFFLPVDCNDIEEQKNMLTSLSMIIQRVCRSLRVITDKELDKDHLSSNEVMAVTDGQFATNAVWSESQHRGMAASLGGEEKFSETMGRKFSEQRRQQETLTLKGDLDCGRVRSPSVEGTFLSSLGINRTGEKRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGSFQIDSFYSKFSDLSSPRTSLISTLNQIDNQVSLSTLPDPDSLSPEGASKSPSSSCSQSSFSSHSCSSMSEQQHHKGDVAAGNKDPSVGEDSVDVVLKRIRSEAELKSLIQDNKTKLMPRSQSQETLGENPKTEHHKSLLKTARKASQKEDSHRVKVTFGDEKTRFRLPKKWGYEDLVQEIARRFNVSEMSKFDIKYLDDDYEWVLLTCDADLEECIDVSQSSETSTIKLCLQPSSNFIRSSLEFR 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00186 899 MobiDBLite consensus disorder prediction 686 743 - -
Tsu07g00186 899 MobiDBLite consensus disorder prediction 764 790 - -
Tsu07g00186 899 ProSiteProfiles RWP-RK domain profile. 573 654 IPR003035 -
Tsu07g00186 899 Pfam RWP-RK domain 586 634 IPR003035 -
Tsu07g00186 899 PANTHER PROTEIN NLP8 21 895 IPR045012 GO:0003700
Tsu07g00186 899 MobiDBLite consensus disorder prediction 686 727 - -
Tsu07g00186 899 SUPERFAMILY CAD & PB1 domains 799 890 - -
Tsu07g00186 899 MobiDBLite consensus disorder prediction 767 781 - -
Tsu07g00186 899 CDD PB1_NLP 806 887 IPR034891 -
Tsu07g00186 899 SMART PB1_new 805 888 IPR000270 GO:0005515
Tsu07g00186 899 MobiDBLite consensus disorder prediction 1 22 - -
Tsu07g00186 899 Pfam PB1 domain 806 887 IPR000270 GO:0005515
Tsu07g00186 899 ProSiteProfiles PB1 domain profile. 805 888 IPR000270 GO:0005515
Tsu07g00186 899 Gene3D - 801 887 - -
Tsu07g00186 899 PANTHER PROTEIN NLP4 21 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00186 Tsu-Chr7 1393610 1398734 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00186 19 890 NLP Transcription Factor Family AT1G20640 49.659 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tsu07g00186 PB1 1.7e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00186 - - gmx:100790922 1244.95