Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00178 ATGAGTTGTTTTTCTTGCTTTGTTTCTCGGAGCAAAAAAGATGTAAGCAGGGTTGAAGTTGATAATGGTTCTCGATCTACTCATACTCAAGgaCATGGTGGAATGAATGTTTCAGAGAGTGAAAGGAACAATGAATATTCAGAGGGAAAGGGGAAGACTGTGAGGAGTGGCAAAAGTAATACTGCAGCAGCTAGTTTCGGTTTTCGCGAGCTTGCATCAGCTACAAAGGGTTTTAATGAAGCCAATTTGATTGGAGAAGGTGGttttggaaaagtttttaaGGGTCGGCTTACGACCGGCGagCTTGTTGCTGTAAAACAATTAAGTCACGATGGTCGTCAAGGTTTTCAAGAATTTGTGACTGAGGTTCTTATGCTAAGTCTGCTGCATCATTCTAATCTTGTTAAGTTAATTGGCTATTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCGATGGGATCTCTCGAGGATCATCTTTTTGATGTTCCCCCAGATAAAGAACCTTTGAGTTGGAGTTCTCGAATGAAGATTGCTCTTGGAGCAGCTAAGGGCATTGAGTATCTCCATTGTAAAGCAGATCCACCTGTTATATATCGAGACTTGAAATCTGGAAACATCTTATTAGACAGTGACTTCAGTCCAAAACTGTCAGATTTTGGGCTTGCTAAACTAGGACCTGTTGGAGACAACACTCATGTTTCAACCAGAGTGATGGGTACATATGGCTACTGTGCGCCAGAATATGCGATGAGTGGCAAATTAACCCTCAAATCTGATATCTACAGCTTCGGCGTGGTTTTGTTGGAGTTGATCACTGGACGCAGGGCAATAGATACAACTAGAAAACCAGGAGAGCAAAACTTAGTTTCATGGTCTCGCCCATATTTTAATGACCGGAGAAAGTTTGTACAAATGGCTGACCCTCTTTTGCAAGGACGCTTCCCCACCCGCTGTTTGCATCAAGCAATTGCTATAACTGGTATGTGTCTCCAGGAGCAACCAAAATTCCGTCCACTCATCGGTGATATTGTTGTTGCACTGGAATACCTAGCTTCTCAGAGTAAACCTGAAGACCATGGACATGGGGTTCGCAGCCCACTGATGCAATCAATTTCCGACATGCACAGATGTTAA 1146 0.4232 MSCFSCFVSRSKKDVSRVEVDNGSRSTHTQGHGGMNVSESERNNEYSEGKGKTVRSGKSNTAAASFGFRELASATKGFNEANLIGEGGFGKVFKGRLTTGELVAVKQLSHDGRQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDVPPDKEPLSWSSRMKIALGAAKGIEYLHCKADPPVIYRDLKSGNILLDSDFSPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDTTRKPGEQNLVSWSRPYFNDRRKFVQMADPLLQGRFPTRCLHQAIAITGMCLQEQPKFRPLIGDIVVALEYLASQSKPEDHGHGVRSPLMQSISDMHRC 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00178 381 SUPERFAMILY Protein kinase-like (PK-like) 61 352 IPR011009 -
Tsu07g00178 381 MobiDBLite consensus disorder prediction 17 58 - -
Tsu07g00178 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Tsu07g00178 381 CDD STKc_IRAK 84 352 - -
Tsu07g00178 381 SMART serkin_6 78 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g00178 381 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Tsu07g00178 381 ProSiteProfiles Protein kinase domain profile. 78 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g00178 381 Gene3D Transferase(Phosphotransferase) domain 1 154 369 - -
Tsu07g00178 381 MobiDBLite consensus disorder prediction 22 42 - -
Tsu07g00178 381 Pfam Protein kinase domain 79 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g00178 381 Gene3D Phosphorylase Kinase; domain 1 50 153 - -
Tsu07g00178 381 PANTHER OS07G0668900 PROTEIN 1 360 - -
Tsu07g00178 381 PANTHER OS07G0668900 PROTEIN 1 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00178 Tsu-Chr7 1332451 1336229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00178 1 356 Glycoside Hydrolase AT3G07070 60.109 4.80e-156 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Tsu07g00178 Pkinase 9.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00178 - - gmx:100796595 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00178 07 1332451 1336229 Tsu07g00178 07 1332451 1336229 ECH