Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00175 ATGAAAGGAGGAAAATCCAAGGGTGAATCAAAGAAAGCTGATACTAAGCTTGCTGTGAATAAGAAGGCCGCTCCCGCTACTAAGGGCGGAAGGAAACCAGCCAAGGGAAAGGAACCAAAAGACCCTAACAAGCCAAAGAGACCTGCGAGTGCTTTCTTCGTTTTCATGGAGGAGTTTAGGAAGCAGTTTAACAAGGAAAACCCTGACAACAGAGCTGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAATCGTTGTCTGAAGCTGAGAAAGCACCATATGCTGCAAAAGCTGAAAAAAGAAAGGCTGAATATGAGAAGAGCTTGAGGGCCTATAACAAGAAACAGGCTGAAGGTCCAGCTGCtgctgatgaagaagaatctgaaaAATCAGAATCTGAGGTGCATGATGagaatgatgatgaggatggcAGCGACGAGGAGGATGATGACGAGTAG 462 0.4242 MKGGKSKGESKKADTKLAVNKKAAPATKGGRKPAKGKEPKDPNKPKRPASAFFVFMEEFRKQFNKENPDNRAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKSLRAYNKKQAEGPAAADEEESEKSESEVHDENDDEDGSDEEDDDE 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00175 153 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Tsu07g00175 153 SMART hmgende2 44 115 IPR009071 -
Tsu07g00175 153 MobiDBLite consensus disorder prediction 1 153 - -
Tsu07g00175 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 152 IPR031061 -
Tsu07g00175 153 Coils Coil 96 116 - -
Tsu07g00175 153 Gene3D High mobility group box domain 29 130 IPR036910 -
Tsu07g00175 153 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Tsu07g00175 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 152 - -
Tsu07g00175 153 MobiDBLite consensus disorder prediction 1 18 - -
Tsu07g00175 153 MobiDBLite consensus disorder prediction 94 127 - -
Tsu07g00175 153 MobiDBLite consensus disorder prediction 31 45 - -
Tsu07g00175 153 SUPERFAMILY HMG-box 36 118 IPR036910 -
Tsu07g00175 153 CDD HMGB-UBF_HMG-box 45 111 - -
Tsu07g00175 153 MobiDBLite consensus disorder prediction 128 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00175 Tsu-Chr7 1305628 1309436 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tsu07g00175 HMG_box 3.2e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00175 K25507 - lang:109352139 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00175 07 1305628 1309436 Tsu07g00175 07 1305628 1309436 ECH