Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00171 ATGATGTCTTCTAGCTGGGATGGAAGTAATGACCCTGGCAGTCAGTCAGATGACAGTTTTATGTTCGATAGGATGCATATTGAGCCTATTTATGATGCTTTTGTATGTCCTCTCACGAAGCAAGTAATGCGAGATCCTGTTACTTTGGAAAATGGACAGACTTTTGAACGTGAATCAATTGAAAAATGGTTCAAGGAATGCAGGGAGAGTGGACGGAAACTGGTTTGTCCCTTGACTCTGCGTGAGTTAAAAAGTGCGGAATTGAATCCTAGTATGGCTTTGCGAAACACTATTGAAGAGTGGACTGCTAGGAACGAAGCTGCACAGCTGGATATGGCTCGGCGTTCATTGAATACGGGGAGTCCAGAAAAGGAAACCCTTCAGGCTTTGAGGTATGTCCAGCACATCTGTCAAAGAAGTCGGTCGAATAAACATGTTGTCCGCAGTGCAGGGCTTATACCAATGATTGTTGATATGCTGAAGAGTGGCAGCCGCAAAGTTCGTTGTAGAGCTCTTGAAACCCTTAGAATTGTGGTAGAGGAAGATGATGAGAATAAGGAACTCTTGGCTGAAGGGGACACTGTGCGTACGGTAGTAAAATTCCTTTCACACGAGCTTTCTAAAGAAAGAGAGGAAGCTGTCTCCTTGCTTTATGAACTATCAAAATCAGAAACCCTTTGTGAGAAGATTGGTTCAATCAATGGATCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGACCTTTCTACTGTTGAGAAGGCTGATAAAACATTAGAGAATCTGGAAAAATACGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTTCTTAACCATCTTCTTGAAGGTCCACCAGAAACCAAACTGTCCATGGCTGGAATCCTTGGTGAGCTGGTTTTGGACAATGATGTTAAAGTCCTTGTTGCTAGAACTGTGGGCTCATCTCTGATCAATATAATGAAAAGCGGCAATATGCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATCATGTGAGCCAAGCGCAAAGGTTTTAATAGAAGCTGGAATACTTTCCCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCTGCTGCCCACTCGACTAAAAGAGGTCTCTGCTACAATTCTTGCCAGTGTTGTGAATTCAGGAGAAGACTTTGATTCGATTCCACTTGGACCTGATCACCAAACTCTGGTCTCGGAGGATATAGTTCATAAGCTACTACATCTTATTAGCAACACTGGTCCAGCAATTGagtgcaaacttctccaagttCTTGTTGGACTTGCTAGTTCTCCAACTACAGTGCTGAGTCTTGTTTCAGCTATCAAAAGCTCTGGTGCCACTATCAGTCTAGTTCAGTTCATCGAGGCACCGCAGAAAGATCTGCGTTTAGCTTCCATAAAACTTCTTCAGAATTTGTCTCCCCACATGGGCCCAGAATTAGCCGATGCGCTTCGTGGCTCAGTGGGACAGCTTAGTAGTCTAGTTAAAGTCATATCAGACAATATCGGAATCACTGAAGAGCAGGCAGCTGCTGTTGGCCTCTTAGCTGATCTACCTGAGAGAGATTTAGGCCTCACGAGACAGCTACTGGATGAAGGTGCCTTTGTGATGGCCATATCGAAGGTGATTGCTATCAGGCAGGGAGAGATCAGAGGCACTCGGTTCGTGACACCATTTCTAGAAGGGCTTATGAAGATTGTTGCAAGGGTTACATATGTCTTGGCTGATGAGCCTGATGCCGTTGCACTTTGCCGCGATCAAAATCTTGCTGCACTCTTCATTGAACTGCTACAGACCAATGGACTTGATAATGTACAGATGGTTTCTGCTATGGCTTTGGAGAATTTATCCCTAGAATCAAAGAATTTAACCAAATTGCCCGAGGTGCCAGAACCGACCTTTTGTGCTTCATTCTTCTCATGTTTCAGTCAACCGCCAGTAGTTACTGGTTTATGTAGGATCCACCGTGGGAAGTGTTctttaaaagaaacattttgTCTTTACGAAGGACAGGCGGTCCTGAAGTTAGTAGCTCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTTGCAGCCTTATGTACTGTAATTGATGATGGAGTAGATATTGAGCAAGGTGTAATGGTTTTGTGTGAAGCAGAGGGAGTGAAGCCTATACTTGACGTGTTACTCGAGAAACGAACAGACAATTTGAGGAGAAGGGCAGTTTGGGCAGTGGAGAGATTGTTGCGAACGGACGATATTGCCTACGAAGTTTCAGGAGATCAAAATGTGAGTACTGCACTCGTGGATGCTTTCCAACACGGCGATTATCGAACTAGGCAGATTGCTGAGCGTGCCCTCAAGCATGTTGATAAGATACCTAACTTCTCAGGAATCTTTCCAAACATGGGATGA 2445 0.436 MMSSSWDGSNDPGSQSDDSFMFDRMHIEPIYDAFVCPLTKQVMRDPVTLENGQTFERESIEKWFKECRESGRKLVCPLTLRELKSAELNPSMALRNTIEEWTARNEAAQLDMARRSLNTGSPEKETLQALRYVQHICQRSRSNKHVVRSAGLIPMIVDMLKSGSRKVRCRALETLRIVVEEDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGSILILVGMTSSKSEDLSTVEKADKTLENLEKYENNVRQMAENGRLQPLLNHLLEGPPETKLSMAGILGELVLDNDVKVLVARTVGSSLINIMKSGNMQSREAALKALNQISSCEPSAKVLIEAGILSPLVNDLFAVGPNLLPTRLKEVSATILASVVNSGEDFDSIPLGPDHQTLVSEDIVHKLLHLISNTGPAIECKLLQVLVGLASSPTTVLSLVSAIKSSGATISLVQFIEAPQKDLRLASIKLLQNLSPHMGPELADALRGSVGQLSSLVKVISDNIGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFVMAISKVIAIRQGEIRGTRFVTPFLEGLMKIVARVTYVLADEPDAVALCRDQNLAALFIELLQTNGLDNVQMVSAMALENLSLESKNLTKLPEVPEPTFCASFFSCFSQPPVVTGLCRIHRGKCSLKETFCLYEGQAVLKLVALLDHTNVNVVEAALAALCTVIDDGVDIEQGVMVLCEAEGVKPILDVLLEKRTDNLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00171 814 SUPERFAMILY RING/U-box 25 111 - -
Tsu07g00171 814 CDD RING-Ubox_PUB 34 79 IPR045210 -
Tsu07g00171 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Tsu07g00171 814 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Tsu07g00171 814 Gene3D - 321 487 IPR011989 -
Tsu07g00171 814 Gene3D - 575 804 IPR011989 -
Tsu07g00171 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Tsu07g00171 814 SUPERFAMILY ARM repeat 116 368 IPR016024 -
Tsu07g00171 814 Coils Coil 257 277 - -
Tsu07g00171 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 812 - -
Tsu07g00171 814 Gene3D - 116 320 IPR011989 -
Tsu07g00171 814 SMART arm_5 182 222 IPR000225 GO:0005515
Tsu07g00171 814 SMART arm_5 718 760 IPR000225 GO:0005515
Tsu07g00171 814 SMART arm_5 348 393 IPR000225 GO:0005515
Tsu07g00171 814 SMART arm_5 591 632 IPR000225 GO:0005515
Tsu07g00171 814 SMART arm_5 673 714 IPR000225 GO:0005515
Tsu07g00171 814 SMART arm_5 140 180 IPR000225 GO:0005515
Tsu07g00171 814 SMART arm_5 266 307 IPR000225 GO:0005515
Tsu07g00171 814 SMART arm_5 308 347 IPR000225 GO:0005515
Tsu07g00171 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 115 IPR013083 -
Tsu07g00171 814 SUPERFAMILY ARM repeat 323 802 IPR016024 -
Tsu07g00171 814 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 2 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00171 Tsu-Chr7 1268271 1273450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00171 3 814 U-box Gene Family AT1G76390 65.111 0.0 1033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00171 - - gmx:100789746 1422.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00171 07 1268271 1273450 Tsu07g00171 07 1268271 1273450 ECH