Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00167 atgTATGATTTTGAAGAGATTGTTATGCCTGTAAAAATGGAATTTTCTCCTCCAATTACAATATTAGAAGGTGATGATTACAACAAAGACAATGCTTGTAAGGTTAAtcatgatgataatgatgatcaGAAATTAGAGGATTTCAATAATCTAAAACCAACCACAATTGGTAAGCCTCCAAGGCATGCATCCATTTTGAGACACAGCCTTAGCTCCACCAGATTGATTGTGGCTTCAGCAGATTTGaCTGTGGATGCTGAGGTTACTGGGAGTAAATCATCTTCTGAAGACAAGACAGAGTATGTACCCATATTTCGGTCGGGAAGTTGTGCTGAAAGAGGACCTAAACAATATATGGAAGATGAACACATATGTATAGATGATCTTATTCATCACATAGGTTCTGCTTCCAATATTCCTTTTCCTGGAGCTTTCTATGGGGTGTTTGATGGTCACGGAGGAACAGACGCTGCTTTGTTTGTAAGAAATAACCTTCTTAGACTCATTGTTGAGGACGCCCAGTTTCCAACTTGTGTGGGGAAGGCAATTACAAGTGCATTCATGAAAGCTGATTATGCATTTGCAGATTCCAGTTCGCTTGATATCTCCTCTGGCACCACTGTTTTAACTGCGCTTGTAATTGGGAGGACCATGATAATTGCAAATGCGGGGGATTGTCGAGCTGTACTGGGGAGACGAGGTAGAGCAATTGAAATGTCAAAAGACCAAAAACCAAATTGCACTTCAGAAAGGCTAAGGATTGAAAAACTTGGCGGGGTGGTATATGATGGATACTTGAATGGCCAGTTATCCGTTTCACGTGCCTTAGGAGACTGGCACATGAAGGGTCCCAAGGGTTCTGCCTGCCCTTTGAGTGCTGAGCCAGAGTTGCAGGAAATCATATTGTCTGAGGATGATGAATTCTTGATTATTGGCTGTGATGGCCTGTGGGATGTAATGAGTAACCAATGTGCTGTGACCATGGCAAGAAAAGAGTTGATGATACATAATGATCCTCAAAGGTGTTCAAGAGAGTTGGTCAGAGAGGCTCTTAAGCGTAACTCGTGTGATAATTTAACAGTTATTGTGGTATGTTTCTCACCAGATCCTCCTCCTAGGATAGAGATACCTCCTTCTCGAGTCAGGAGGAGTATATCAGCAGAAAGCCTCACTTTACTTAAGGGTGTATTAGAGTGTTAG 1200 0.4117 MYDFEEIVMPVKMEFSPPITILEGDDYNKDNACKVNHDDNDDQKLEDFNNLKPTTIGKPPRHASILRHSLSSTRLIVASADLTVDAEVTGSKSSSEDKTEYVPIFRSGSCAERGPKQYMEDEHICIDDLIHHIGSASNIPFPGAFYGVFDGHGGTDAALFVRNNLLRLIVEDAQFPTCVGKAITSAFMKADYAFADSSSLDISSGTTVLTALVIGRTMIIANAGDCRAVLGRRGRAIEMSKDQKPNCTSERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSACPLSAEPELQEIILSEDDEFLIIGCDGLWDVMSNQCAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVIVVCFSPDPPPRIEIPPSRVRRSISAESLTLLKGVLEC 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00167 399 SUPERFAMILY PP2C-like 101 367 IPR036457 -
Tsu07g00167 399 SMART PP2C_SIG_2 121 366 IPR001932 -
Tsu07g00167 399 SMART PP2C_4 96 364 IPR001932 -
Tsu07g00167 399 CDD PP2Cc 105 366 IPR001932 -
Tsu07g00167 399 Gene3D - 83 369 IPR036457 -
Tsu07g00167 399 ProSiteProfiles PPM-type phosphatase domain profile. 106 366 IPR001932 -
Tsu07g00167 399 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 9 388 - -
Tsu07g00167 399 ProSitePatterns PPM-type phosphatase domain signature. 145 153 IPR000222 GO:0043169
Tsu07g00167 399 Pfam Protein phosphatase 2C 107 358 IPR001932 -
Tsu07g00167 399 PANTHER PROTEIN PHOSPHATASE 2C 9 388 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00167 Tsu-Chr7 1248452 1251501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00167 11 398 PP2C-type Phosphatase Gene Family AT2G33700 71.026 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00167 K14803 - gmx:100778015 625.165