Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00166 atgatgaatttgttttattattactggctgttggtggtggtggttgtgcTTCCCTATTATTTTGGAGTTAGAGGAGtttattcaaattcaacaaCTATTTCAAATGTTTCATTTTCAAGACCCTCCGTTGTAAATATTGGTGCTATCTTCACCTTTGATTCCTCCATTGGTAAAGTTGCTAAACTTGCCATGGAACAAGCTGTTATAGATGTCAACTCCAATTCCTCTATTCTTCATTCAACTCAACTTGTTCTTCATATGCAAACTTCCAATTGTAGTGGTTTCGATGGCATGATTCAAGCTCTGCGGTTCATGGAGACGGATGTAATTGCTATATTAGGACCACAATCTTCTGTAGTTTCTCACATAGTATCCCATGTTGCAAATGAGCTTCGTGTTCCTATGTTGTCATTTGCAGCTACAGACCCTACACTCTCGTCCTTGCAATTCCCTTTCTTTGTTAGGACGACACTCAGTGATTCGTACCAAATGACTGCTGTTTCtgaaataattgatttttatggaTGGAAGGAAGTTATTGCTatttatgtagatgatgatTATGGACGAAACGGTGTGTCTGCCTTAGATGATGCGTTAGCAGGGAGGCGTTGTAGAATCTCCTATAAGGCAGGAATCAAATCAGGACCTGATGTTGATAGAAATGAAATCACCAATTTGCTTGTGAGTGTTGCAATGATGCAGTCTCGAGTTATTGTTGTTCATGCACATTCTAATTCTGGATTTATGATCTTCAAAGTTGCGCGATATCTTGGGATGATGCAGGAGGGTTATGTCTGGATAGCCACAGATTGGCTTTCCACTGTTCTAGATTCTGCGTCTCTTCCTTCCGAGACAATGGATACTCTGCAGGGTGCGCTGGTTTTGCGCCAGCATACGCCTGATACTGATAGGAAGAAAGCGTTTTTATCCAGGTGGAACAAGTTAACCGGTGGTTCCTTGGGGTTAAATTCTTATGGCCTCAATGCTTATGATTCTGTTTGGCTCGTTGCACAAGCCATTGATAAATTTTTCAGTCAGGGTGGGGTCCTTTCGTGTACGAATTACACTAGTTTGCATGACGATAAGGGAAAGGGAGGTGGTCTTAACCTTGATGCCATGAGCATATTTGACAATGGAACACTTCTGTTGAAAAACATATTGCATACTGATTTTGTTGGATTATCAGGTCCATTGaaatttgattcagaaaaatctCCTTATCGTCCTGCCTATGACATCATTAATGTTGTTGGAAATGGTGTCCGTCGAATTGGTTACTGGTCTAACTATTCTGGTCTATCAATTGTATCTCCTGAGATGTTGTATGCTAACCCACCTAATAGATCAAATGCAAACCAGCACCTTCACACTGTGATATGGCCCGGAGAAACATTATCCAGGCCCCGTGGATGGGTCTTCCCAAACAATGGCAAACAATTGAGAATTGGTGTGCCTATTAGAGCCAGTTTCCGTGAATTTGTGTCACCGGTGAAGGGAACTGATAATTTTAAAGGGTTTTGCATTGATGTATTTATAGCAGCTGTAAACTTGTTACCATATGCTGTTCCTTATCGATTTGTGCCATTCGGAGATGGCCTCAAAAATCCAAGCTACACAGGACTTGTCAACTTAATAACCGCTGGTGTTTTTGATGGTGCTGTTGGTGATTTTGCTATTGTCACAAATCGGACCAGGATTGTAGATTTTACACAGCCTTATGCTGCATCTGGACTTGTTGTGGTTGCCCCTTTTAAGAAGATCAATTCCGGCGGTTGGTCTTTCCTGCAGCCGTTCACTCCTTTTATGTGGATGGTGACtgcttgtttcttttttttcgtCGGGATAGTAGTATGGATTCTGGAACACAGAATAAATGATGAGTTTAGGGGTCCACCTAAACAACAAATTATAACCATATTATGGTCAGTTATTTGTTTAATCATCACCTGCCGTGTTTTGCTAAATAGTTGTTAG 1977 0.3864 MMNLFYYYWLLVVVVVLPYYFGVRGVYSNSTTISNVSFSRPSVVNIGAIFTFDSSIGKVAKLAMEQAVIDVNSNSSILHSTQLVLHMQTSNCSGFDGMIQALRFMETDVIAILGPQSSVVSHIVSHVANELRVPMLSFAATDPTLSSLQFPFFVRTTLSDSYQMTAVSEIIDFYGWKEVIAIYVDDDYGRNGVSALDDALAGRRCRISYKAGIKSGPDVDRNEITNLLVSVAMMQSRVIVVHAHSNSGFMIFKVARYLGMMQEGYVWIATDWLSTVLDSASLPSETMDTLQGALVLRQHTPDTDRKKAFLSRWNKLTGGSLGLNSYGLNAYDSVWLVAQAIDKFFSQGGVLSCTNYTSLHDDKGKGGGLNLDAMSIFDNGTLLLKNILHTDFVGLSGPLKFDSEKSPYRPAYDIINVVGNGVRRIGYWSNYSGLSIVSPEMLYANPPNRSNANQHLHTVIWPGETLSRPRGWVFPNNGKQLRIGVPIRASFREFVSPVKGTDNFKGFCIDVFIAAVNLLPYAVPYRFVPFGDGLKNPSYTGLVNLITAGVFDGAVGDFAIVTNRTRIVDFTQPYAASGLVVVAPFKKINSGGWSFLQPFTPFMWMVTACFFFFVGIVVWILEHRINDEFRGPPKQQIITILWSVICLIITCRVLLNSC 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00166 658 SMART GluR_14 482 657 IPR001320 GO:0015276|GO:0016020
Tsu07g00166 658 Gene3D - 591 653 - -
Tsu07g00166 658 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 117 145 - -
Tsu07g00166 658 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 57 73 - -
Tsu07g00166 658 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 330 342 - -
Tsu07g00166 658 PANTHER GLUTAMATE RECEPTOR 3.3 32 646 - -
Tsu07g00166 658 SUPERFAMILY Periplasmic binding protein-like I 38 473 IPR028082 -
Tsu07g00166 658 Gene3D - 476 590 - -
Tsu07g00166 658 Pfam Ligated ion channel L-glutamate- and glycine-binding site 498 582 IPR019594 GO:0004970|GO:0016020
Tsu07g00166 658 SUPERFAMILY Periplasmic binding protein-like II 457 609 - -
Tsu07g00166 658 CDD PBP1_GABAb_receptor_plant 45 437 IPR044440 -
Tsu07g00166 658 Gene3D - 62 409 - -
Tsu07g00166 658 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 646 - -
Tsu07g00166 658 Pfam Receptor family ligand binding region 61 419 IPR001828 -
Tsu07g00166 658 PRINTS Metabotropic glutamate GPCR signature 179 196 IPR000337 GO:0004930|GO:0007186|GO:0016021
Tsu07g00166 658 PRINTS Metabotropic glutamate GPCR signature 144 163 IPR000337 GO:0004930|GO:0007186|GO:0016021
Tsu07g00166 658 PRINTS Metabotropic glutamate GPCR signature 112 138 IPR000337 GO:0004930|GO:0007186|GO:0016021
Tsu07g00166 658 PRINTS Metabotropic glutamate GPCR signature 163 179 IPR000337 GO:0004930|GO:0007186|GO:0016021
Tsu07g00166 658 Gene3D - 159 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00166 Tsu-Chr7 1242377 1246640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00166 39 642 Ion Channels AT1G42540 64.026 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00166 K05387 - gmx:102661260 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00166 07 1242377 1246640 Tsu07g00166 07 1242377 1246640 ECH