Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00154 ATGACTCGTCCTTTTAGATTTCTCGACGAGAACAACTCGTCTTCCGAAGATTCCACCGTCGTTGATTCCGATTTCGTCGTTATCCTCGCCGCTCTTCTCTGCGCTCTCATCTGCGTTCTAGGTCTAGTCGCCGTCGCACGCTGCGGTTGTTTCCGTCGTCTACGTCTCCCTTCCCCCGCCCTCACTTCTCAAACTACACCTCCTTCTGCAGCAAACAAAGGCGTTAAGAAGAAAGTACTTCGCTCTCTTCCGAAACTCACAGCAACAGAGGAATCCGCAGTGAAATACTCCGATTGTGCTATTTGTTTGAGTGAATTCACCGCCGGTGATGAAATTCGAGTGTTACCTCAGTGCGGTCATGGATTCCACGTGTCATGTATTGATTTGTGGCTCAGATCTCATTCTTCGTGTCCGTCTTGCCGTCAGATTTTGGTAGTTTCTAGATGCGATAAGTGCGGCGGGATTCCAGCTCCTGCTACAACTGCCGCGTCTAGCTCTACGCCGGCGTCGGATTGTGAAGCTAGATTAAAGGTAAGGGAGGATGATGGAAACAGATTCTTACCATAG 567 0.4974 MTRPFRFLDENNSSSEDSTVVDSDFVVILAALLCALICVLGLVAVARCGCFRRLRLPSPALTSQTTPPSAANKGVKKKVLRSLPKLTATEESAVKYSDCAICLSEFTAGDEIRVLPQCGHGFHVSCIDLWLRSHSSCPSCRQILVVSRCDKCGGIPAPATTAASSSTPASDCEARLKVREDDGNRFLP 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00154 188 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Tsu07g00154 188 SUPERFAMILY RING/U-box 79 147 - -
Tsu07g00154 188 PANTHER RING-H2 FINGER PROTEIN ATL8 1 179 - -
Tsu07g00154 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 145 IPR013083 -
Tsu07g00154 188 CDD RING-H2_PA-TM-RING 98 141 - -
Tsu07g00154 188 Pfam Ring finger domain 98 141 IPR001841 -
Tsu07g00154 188 SMART ring_2 99 140 IPR001841 -
Tsu07g00154 188 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00154 Tsu-Chr7 1177588 1178464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00154 5 188 C3H Transcription Factor Family AT1G20823 58.462 2.26e-66 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00154 - - gmx:100794614 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00154 07 1177588 1178464 Tsu07g00154 07 1177588 1178464 ECH