Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00149 ATGATGTTAACAATGGAAGAGGTACTTTGTGAACTAAGTGAGcatgagaagaaaaatgaaCAAGGTTTACCACCTGGGTTTAGGTTTCATCCAACTGATGAAGAACTCATTACCTTTTATTTGGCTTCAAAGGTTTTCAAAAATACTTTTTTCAACAATGTCAAGTTTGCTGAGGTTGATCTCAATAGATGTGAGCCATGGGAACTTCCagAAATGGCAAAGATGGGAGAAAGAGAATGGTATCTATTCAGCTTAAGAGACAGGAAATACCCAACTGGTCTTAGAACAAACAGAGCAACTAGTGCTGGTTACTGGAAAGCCACCGGAAAAGACAAAGAAGTTTACAGCTGTAGTAATGCAAGATCCTTATTAGGGATGAAGAAGACTCTTGTTTTCTACAAAGGAAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTAGACAATCACTTTTCACCTTCTCATCATCCTCACACCTGCAAGGAAGAGTGGGTGATATGTAGGATATTTCATAAATCAGGAGAAAAGAGAAATTCAATACTCCAACTTCAAAGTGGTAATGCTAATGCTAATTATAATTTAACATCCAAAAAAAGTTGTTTACCACCACCTCCACATTTAATCACAAATCCAACTTCATTTACACAACTAAACCAAAATGACCAATTAATCTCCTCACATTCTCATAACATTTTCCCATTGCAACCATTCCAAACTTCCTTCCAAATCAACCACACATGCAGAAACAACAATCTTCCATCTTCTGAATTACTTTTCAAGCCACAACAAAATTTCAACATGAAACAAACCATTCCAAAATCAGAGGCTACATTCTATGATCAATACCAATCACAATCAATTGATGATGCAATTAACCTGAGATGGATTGACAATAATAATTCAAGTAATTTTGAAAACTCATCTTCATTCCCTGTGGAGATGGATGCTGAATTGATTGAATTCTCAGGAGCTGCTGCTACAAATGCTGAATTTAGGGACATGTCAAGTACTTCAACAACCTTTAATAATAGTAGAATAGGCTTAGATGTTCCTATGGGAATAGATTCTTGGACACAGGCACAACTTGTCTAA 1107 0.3631 MMLTMEEVLCELSEHEKKNEQGLPPGFRFHPTDEELITFYLASKVFKNTFFNNVKFAEVDLNRCEPWELPEMAKMGEREWYLFSLRDRKYPTGLRTNRATSAGYWKATGKDKEVYSCSNARSLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDNHFSPSHHPHTCKEEWVICRIFHKSGEKRNSILQLQSGNANANYNLTSKKSCLPPPPHLITNPTSFTQLNQNDQLISSHSHNIFPLQPFQTSFQINHTCRNNNLPSSELLFKPQQNFNMKQTIPKSEATFYDQYQSQSIDDAINLRWIDNNNSSNFENSSSFPVEMDAELIEFSGAAATNAEFRDMSSTSTTFNNSRIGLDVPMGIDSWTQAQLV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00149 368 Gene3D NAC domain 32 182 IPR036093 GO:0003677|GO:0006355
Tsu07g00149 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 316 - -
Tsu07g00149 368 ProSiteProfiles NAC domain profile. 23 177 IPR003441 GO:0003677|GO:0006355
Tsu07g00149 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3 13 316 - -
Tsu07g00149 368 SUPERFAMILY NAC domain 18 177 IPR036093 GO:0003677|GO:0006355
Tsu07g00149 368 Pfam No apical meristem (NAM) protein 24 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00149 Tsu-Chr7 1131673 1134315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00149 1 186 NAC Transcription Factor Family AT1G76420 73.656 3.32e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu07g00149 NAM 3.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00149 - - mtr:MTR_3g116070 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00149 07 1131673 1134315 Tsu07g00149 07 1131673 1134315 ECH