Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00144 atgGCATACCAAAGTTCAGGATCAAGTTCAGGTTCTGGATTTCAATTGTTGAATTCTCCTTTTGGAGATACAACTTATACTAAGGTTTTTGTTGGAGGATTGGCTTGGGAGACTCAAAGTGAAACTATGCGCCGTTACTTTGAACAGTTTGGGGATATTCTAGAAGCTGTTGTCATCACTGATAAGAACACTGGGAGATCCAAAGGCTACGGTTTTGTGACTTTCCGTGATCCAGAAGCGGCTAGGAGAGCCTGTGCCGATCCAAGTCCCGTTATTGATGGTAGAAGAGCTAACTGTAATTTGGCTTCTCTTGGTCGACCACGACCTCCTATGGCTTATGgACGGGTAAGACCAGCATCCCCTTATGTTGGAAGTTTGCAACCGGCCCGTGGTGCTTACGTTGGAGGTTATGGCTACCAACAACCACTTCCCTATGGCTATCAACAAGGAATGGTTTATCCACCTTACGGGTATACAGCATATGGACCTGAATACGTCTACCCACAGAGTATGTATGCGGGTCAACAGTACCTTCAGATATATGGTGTGCCTGGTGCAGTGAATACAAATATTTATCCTTATGGACAACTGGGTCAAGCTATTCATGGTGGCCATGGTTATACAGCAATGCAGGGTTATACAGTACCGGGTCATCAGCTTGTTTCCTATGGTGGATCAAATGTTAATGTAATAACTTCTTCACCTATGTCTGCCATTCAAGCTCCATATCCTAGTGGAATTGCTACACCAGTTCCAGGCCAACCACAATTTATTGTTTCTCCTCAGTTCATGCAAGGTAGCGGTCCTGACCAAACAACTGGTTAG 825 0.4461 MAYQSSGSSSGSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASLGRPRPPMAYGRVRPASPYVGSLQPARGAYVGGYGYQQPLPYGYQQGMVYPPYGYTAYGPEYVYPQSMYAGQQYLQIYGVPGAVNTNIYPYGQLGQAIHGGHGYTAMQGYTVPGHQLVSYGGSNVNVITSSPMSAIQAPYPSGIATPVPGQPQFIVSPQFMQGSGPDQTTG 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00144 274 CDD RRM_RBM24_RBM38_like 27 102 - -
Tsu07g00144 274 SMART rrm1_1 28 100 IPR000504 GO:0003723
Tsu07g00144 274 Gene3D - 4 117 IPR012677 -
Tsu07g00144 274 SUPERFAMILY RNA-binding domain, RBD 26 138 IPR035979 GO:0003676
Tsu07g00144 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 104 IPR000504 GO:0003723
Tsu07g00144 274 PANTHER BOULE-RELATED 4 270 IPR037366 GO:0003729
Tsu07g00144 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 85 IPR000504 GO:0003723
Tsu07g00144 274 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 4 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00144 Tsu-Chr7 1099953 1104957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00144 16 103 C2H2 Transcription Factor Family AT2G19380 42.045 7.55e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00144 - - aprc:113864528 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00144 07 1099953 1104957 Tsu07g00144 07 1099953 1104957 ECH