Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00142 ATGGAGGGTGGTGAGAGAATTAGTGATGAAATGGATCTCGTTCATTCAGAAAATCGTAATAACAACAATAAGGATCAAAATGCTGCTGTAAATTCTGTTCCTTTGGATCAAGAAATGGTTGATCAAGGTGATGCTGATACAACAAATGTCAATTCTACCCCTACTCATCAGCTTGAACAACTCATTACTCCAAAACCTAAAGTTAAGAATGTTACAGAAGTCAATAATAATGTACTAAACACTGCTAACGAGATGGCTGCTTATGATGTGACGGGTACGCCTATGGAGCAAGAAGCGTTTATGAAAGAGCTCGAGAGTTTCTACAGATCGAGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGTGCCGTTGAATTGCCTCAAGTTATGGAGATCTGTTATCAAACTAGGTGGCTATGAAGTGGTAACTGGATCGAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCTCCTAAGACCTGCACTACAGTCTCGTGGACGTTCAGAATCTTTTATGAGAAGGCACTTTTAGAGTTTGAAAAGCACAAGAGAGAGATTGGGGAGGTACAGCTCCCTGTTGGATCACTCCATCAACCTTCAAGTGTGGAAAAAGAGACCGCTGTTTATCAGGCTCCAGGCTCAGGTAGGGCTCGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGTCTTATGGGATATGGTGAGGTTGCTGAATCAGCTGTTAAGGACAAGAACTTCAGTCCCACACCACCAAAACGTGAAAAGAACCTCAAAAATATTGGTGTGATCAACAAACAGAGGACACCATCTGGTATGGACCATGCCGACAAAGCTGCAAATATAGAAGGAGATAGGCAGTTGATCACAGCAGTAGTGGACATTGGACCCCCAGCTGACTGGGTGAAGATTAATGTGCGGGAAACGAAGGATTGCTTTGAAGTGTATGCACTAGTTCCCGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCCGATCCAGTTGGACGACTTGTTATAACTGGTATGCCAGAACATGTCGACAATCCTTGGGGTATTACCCCCTTCAAAAAGGTTGTGAACTTACCTGCGAGGATTGATCCACTCCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGTGTTCCTTTTGAGCAGGGAGCTGTATGA 1188 0.4495 MEGGERISDEMDLVHSENRNNNNKDQNAAVNSVPLDQEMVDQGDADTTNVNSTPTHQLEQLITPKPKVKNVTEVNNNVLNTANEMAAYDVTGTPMEQEAFMKELESFYRSRSLEFKPPKFYGVPLNCLKLWRSVIKLGGYEVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEFEKHKREIGEVQLPVGSLHQPSSVEKETAVYQAPGSGRARRDAAARAMQGWHAQRLMGYGEVAESAVKDKNFSPTPPKREKNLKNIGVINKQRTPSGMDHADKAANIEGDRQLITAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGMPEHVDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00142 395 CDD ACD_sHsps_p23-like 310 389 - -
Tsu07g00142 395 ProSiteProfiles ARID domain profile. 94 185 IPR001606 GO:0003677
Tsu07g00142 395 SUPERFAMILY ARID-like 92 191 IPR036431 GO:0003677
Tsu07g00142 395 SUPERFAMILY HSP20-like chaperones 303 390 IPR008978 -
Tsu07g00142 395 SMART bright_3 95 186 IPR001606 GO:0003677
Tsu07g00142 395 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 17 392 IPR045147 GO:0006357
Tsu07g00142 395 SMART ARID_2 91 181 - -
Tsu07g00142 395 Gene3D - 95 193 IPR036431 GO:0003677
Tsu07g00142 395 Gene3D - 295 394 IPR008978 -
Tsu07g00142 395 Pfam ARID/BRIGHT DNA binding domain 96 181 IPR001606 GO:0003677
Tsu07g00142 395 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 17 392 - -
Tsu07g00142 395 Pfam Hsp20/alpha crystallin family 310 391 IPR002068 -
Tsu07g00142 395 CDD ARID 96 181 - -
Tsu07g00142 395 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 294 395 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00142 Tsu-Chr7 1084381 1090062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00142 84 392 ARID Transcription Factor Family AT1G76510 72.258 5.92e-153 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tsu07g00142 ARID 3.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00142 - - lang:109344023 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00142 07 1084381 1090062 Tsu07g00142 07 1084381 1090062 ECH