Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00125 ATGTTGCACTGTTTGAATACTAATTCCGGGAATCTACCATCTGAAAGTTGCTCCTCAGACATAACTGTTTTGGAAAGACAAACAGAAAGAATGAAGTGGCAACAACAAAATGAACAACGTTACTTTTCTGAAAATGGATTCAACAGTAATAGTAATAGTACTGTGTTCTGTTCTTCTCTGCAACAACTAGTTCAGAATTCTCAAGATTCTTCATCATTTGCTCATTTACTGTCTCATCAAATCCCAACCGTTGATGCCActtcttcatcaatttcaaGAACCTTCAGCTGTCCACCTCTTCTTCCAGACCCCAAACTCATTCATTCTTCTAAAAAGAGAAAATCAGAAAAACTCAAGGCTgttgatgaaattgaaaacaaagatAAGAGGATCAAGGTTGGTGCTGAGGATGGTGAATCTAAGATCACAGGACACCTCAGTGCCAAAAAGAGTAACAGCAATAACAAAGAAAATTGTGGAGCAGAAGATACTTCAAACTCGAAGGAAAATTCAAAAGTCTCTGAGGTTCAAAATCAAAAGACTGATTACATTCATGTTCGTGCGCGTCGCGGTCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTGAGAAGAGAAAAGATTAGTGAGAGAATGAAGTATTTACAAGATTTAGTACCGGGGTGTAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTCCAAAAACAAGTGGAGTTCTTATCAATGAAATTAGCTACAGTTAATCCAAGACTTGATCACTTCAATATTGATGATCTATTTGAAAAAGAGGTAATGAatgttcaaacttcaaattga 843 0.3464 MLHCLNTNSGNLPSESCSSDITVLERQTERMKWQQQNEQRYFSENGFNSNSNSTVFCSSLQQLVQNSQDSSSFAHLLSHQIPTVDATSSSISRTFSCPPLLPDPKLIHSSKKRKSEKLKAVDEIENKDKRIKVGAEDGESKITGHLSAKKSNSNNKENCGAEDTSNSKENSKVSEVQNQKTDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQKQVEFLSMKLATVNPRLDHFNIDDLFEKEVMNVQTSN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00125 280 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 108 279 IPR024097 GO:0006355
Tsu07g00125 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 192 242 IPR011598 GO:0046983
Tsu07g00125 280 CDD bHLH_AtBPE_like 182 268 - -
Tsu07g00125 280 MobiDBLite consensus disorder prediction 145 179 - -
Tsu07g00125 280 Pfam Helix-loop-helix DNA-binding domain 196 243 IPR011598 GO:0046983
Tsu07g00125 280 MobiDBLite consensus disorder prediction 135 179 - -
Tsu07g00125 280 SMART finulus 198 248 IPR011598 GO:0046983
Tsu07g00125 280 Gene3D - 189 264 IPR036638 GO:0046983
Tsu07g00125 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 262 IPR036638 GO:0046983
Tsu07g00125 280 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 108 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00125 Tsu-Chr7 844938 849020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00125 126 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 65.772 3.29e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g00125 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00125 - - gmx:100798855 280.411