Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00100 ATGGCTAAACCAAAAGCTCCAAAACGAACCCTAGAGTCATACCCAGTCAAACACATGAACAAAAATATCaaagcTGGTGATTGTGTGCTGATGCGTCCAGCTGAACCATCGAAACCCTCGTATGTTGCTAGGATCGAGGGGATCGAAGCTGATTCAAGAGGTGCTAATGTCAAAATTCATGTTCGTTGGTATTATCGGCCGGAGGAGTCAATTGGTGGCCGGCGACAGTTTCATGGCTCGAAAGAGGTTTTTCTTTCTGATCATTTCGATGTTCAGAGTGCTGATACAATTGAAGGGAAGTGTACTGTTCACAGTTTCAAGAGCTACACCAAGCTTGATGCTGTTGGTAATGAAGATTTCTTCTGTCGTTTCGAGTATAATTCCGCTACCGGTTCTTTCAATCCTGATAGAGTTGCTGTGTATTGCAAATGTGAGATGCCCTACAACCCGGATGATCTTATGGTCCAGTGTGAGGGATGCAGTGACTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCGAGAGACTTGACCACTTCTTTTGTGAAAGTTGTTCTGCCGAAGGTCAACCAAAGTTGCCAAATCCTCATTCTGCTACAAGACACTCAGATACCAAGGTGGACACTAAACGCCGTCGAAGGTAG 651 0.4485 MAKPKAPKRTLESYPVKHMNKNIKAGDCVLMRPAEPSKPSYVARIEGIEADSRGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLDAVGNEDFFCRFEYNSATGSFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAERLDHFFCESCSAEGQPKLPNPHSATRHSDTKVDTKRRRR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00100 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Tsu07g00100 216 Pfam BAH domain 23 136 IPR001025 GO:0003682
Tsu07g00100 216 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 216 IPR045205 GO:0006325|GO:0035064
Tsu07g00100 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 201 IPR013083 -
Tsu07g00100 216 Gene3D - 2 135 IPR043151 -
Tsu07g00100 216 Pfam PHD-finger 141 189 IPR019787 -
Tsu07g00100 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Tsu07g00100 216 PANTHER OS08G0421900 PROTEIN 1 216 - -
Tsu07g00100 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Tsu07g00100 216 SMART PHD_3 141 188 IPR001965 -
Tsu07g00100 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Tsu07g00100 216 MobiDBLite consensus disorder prediction 191 216 - -
Tsu07g00100 216 SUPERFAMILY FYVE/PHD zinc finger 130 194 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00100 Tsu-Chr7 678091 682479 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00100 31 139 Core DNA Replication Machinery Family AT4G14700 30.275 8.33e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu07g00100 BAH 5.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00100 - - gmx:100787968 424.861