Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00093 ATGGAGTTTGCCGTTGCAAAAGCTTTGAAACCGAGTTTAAGGAGTGAGTTTGTTTTTCAACAAACGCTTGGTGAGGAATTATTCAGTTTCAACGCTAACACGGTGGTTGCTGGTGAAGATTTCTCCGTTGACGACCTCCTTGACTTTTCTAACGGCGACGACGTTATTCACCATGAAAACCacgacgaagaagaagaagaggaaaaagATAACTCATCTCTttcctctcactctctctcagAAGATAACAATTCCTCCAATTCCACCGACGCTTCTTATGATTCCATTTTCTCAACTGAATTACTCGTTCCGGATGATGACGTGGCAGGTTTGGAATGGGTTTCTCATTTCGTAGATGATTCTCTACCGGAATTATCTCTTCTCTACCCggttcaaattcaaaccaacaacACGTGtcctcaaaatcaaaccaaccATGGAAAAACTCTTCGTTTTTCTTCTGAGAAAatcaaaattaccaaaaaaaccAGAACCATGAAGAACAGAAAACCAAACCCTCGCGTTTGGGCTCTTAGCCCTTTGCTTTTGCGTCCGTTTTTCTCGTCTCCGCCGCCTTTGGTTTCCGGTGAGCCACCAGCgaagaaacagaagaaaaaGGCTCAGGCCCAAGATGGTGAGGTTGAGGCCCAAGTTGAGGCCCATTTACAGCGAAGGTGTAGTCATTGCCAGGTTCAGAAGACGCCACAGTGGAGAACCGGTCCATTAGGAGCTAAAACCCTTTGTAACGCGTGTGGGGTTCGGTATAAGTCCGGTCGGCTTTTTTCGGAGTATAGACCGGCTTGTAGCCCAACTTTCAGCAGTGAAATTCATTCCAATAGTCACCGGAAAGTGTTGGAGATGAGGAGGAGGAAAGGGATGGTTGGACCGGAACCCGGTTTACCGGCTCAGACCCAAATGGTTACGACTTGTTGA 933 0.4084 MEFAVAKALKPSLRSEFVFQQTLGEELFSFNANTVVAGEDFSVDDLLDFSNGDDVIHHENHDEEEEEEKDNSSLSSHSLSEDNNSSNSTDASYDSIFSTELLVPDDDVAGLEWVSHFVDDSLPELSLLYPVQIQTNNTCPQNQTNHGKTLRFSSEKIKITKKTRTMKNRKPNPRVWALSPLLLRPFFSSPPPLVSGEPPAKKQKKKAQAQDGEVEAQVEAHLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRRRKGMVGPEPGLPAQTQMVTTC 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00093 310 MobiDBLite consensus disorder prediction 192 215 - -
Tsu07g00093 310 Pfam GATA zinc finger 226 259 IPR000679 GO:0006355|GO:0043565
Tsu07g00093 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 282 - -
Tsu07g00093 310 Gene3D - 220 270 IPR013088 GO:0006355|GO:0008270
Tsu07g00093 310 CDD ZnF_GATA 225 282 IPR000679 GO:0006355|GO:0043565
Tsu07g00093 310 PIRSF Txn_fac_GATA_plant 20 308 IPR016679 GO:0003677|GO:0005634|GO:0045893
Tsu07g00093 310 MobiDBLite consensus disorder prediction 53 75 - -
Tsu07g00093 310 PANTHER GATA TRANSCRIPTION FACTOR 1 310 - -
Tsu07g00093 310 ProSiteProfiles GATA-type zinc finger domain profile. 220 256 IPR000679 GO:0006355|GO:0043565
Tsu07g00093 310 MobiDBLite consensus disorder prediction 76 91 - -
Tsu07g00093 310 MobiDBLite consensus disorder prediction 199 215 - -
Tsu07g00093 310 PANTHER GATA TRANSCRIPTION FACTOR 1 310 - -
Tsu07g00093 310 ProSitePatterns GATA-type zinc finger domain. 226 251 IPR000679 GO:0006355|GO:0043565
Tsu07g00093 310 SMART GATA_3 220 274 IPR000679 GO:0006355|GO:0043565
Tsu07g00093 310 MobiDBLite consensus disorder prediction 53 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00093 Tsu-Chr7 609089 611043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00093 40 288 C2C2-Gata Transcription Factor Family AT4G36240 42.188 5.49e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu07g00093 GATA 9.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00093 - - gmx:100780311 321.627