Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00088 ATGGCTGCTGAAGAAGACGAAGCACCGCTTAACCAATCTCCACCTCCTCTCCAACAACCCTCCGATTCTCCGCTGCCGGACCTCCCTATCAATGCCGACATCCACCAAGCCGGAGAGCTTGAGGCTGTGGTTGCAGGTGAGACGAGTGATGCTGCCGCTGTAAACACGGAGGTTGTTGTTGATGACGTGGCACCGGCTGAGGGCGGTGAAATGCATGCGATGGATGGTATTGAAGATGAAATTGTTGTTGTGGAAAAGAAGGAGGATGAAGGAACTGAAGTTGATTTGGAACCTGAGAATGTGGAAGAAGCCGAAACCAATTTGATAATTGGAGAGGAGGAGGTTCAAATTAGGGATGATGAAAACACAGATGAAGCTCCTCCGGTgggagatgatgaagaagaagaagacaacGATGAAaagaaaggagaagaagaaaacgagaaggaagatgaagaaggagatGAAATAGAAGACGAGAAGGTAGAAGAAGGAGATGAAATAGAAGAAGACGAGAAGGTAGAAGAAGGAGATGGAATAGAAGAAGAcgtgaaggaagaagaaggagatgaagaaaTAGAAGAAGCGGGAGAACAAGAGCAAGAgcaggaagaagaagaagaagaagatgacgACGAAGAAACTGAAGTAGATGGTGATGGTGGTTTGACAGAAGATAAAGAGGCTGCTGAGGATATGGAGGTGACAGAGGAGGAGCAGAGTGTGAGTGGTGGGAAAAGGAAGCGTGGGAATGCTAAGACTTCAAAGTCTACCGGGAGAGTTCCGTCGAAGAAAAAGATGGAAGAGGATGTTTGTTTCATTTGCTTTGATGGTGGTGACCTTGTGCTCTGTGACCGCAGGGGTTGCCCCAAGGCTTACCACCCTTCCTGTATTAATCGCGACGAGGCCTTCTTCCAATCCAAAGGAAAGTGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGAGAAGAATGCATACTACTTGTGCTATACATGTACATTCTCTTTGTGCAAGGGTTGTATCAAAGATGCTGTTATGCTATGTGTTAGGGGAAACAAAGGCTTTTGCGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGAGGAGGGAAACAACATGGCACAAGTTGATTTTGATGACAAAAATAGCTGGGAATATCTCTTCAAGGATTACTATGTAGATCTAAAAGGAAAGCTGTCTCTAACATCTGATGAACTCGCTCAAGCTAAAAACCCTTGGAAGGGATCTGGTAAGCTTCCTTCCAAAGAGGAATCGCCGGATGAACTTTTTGATGCCACAAATGATAGAGGATCAGATTCAGATAGCTCTTATGAGAAAGCAGATTTAAGTCGATCTAAAAAAAGAAAGTCCAAGAAACGGGCCAAGTCTCGTTCCAAAGAAAGAAATTCACATAGTGCAGCGACAGCGCATGGTGCTGATGGGCCATCTACAGATGAAagctctgagtgggcttcaaaGGAGCTTTTGGAGTTTGTTATGCATATGAAAAATGGAGATAAATCTATGTTGTCACAGTTTGAGGTGCATGCTCTTTTGCtagaatatattaaaataaataagcttCGAGATCCTCGCCGAAAAAGTCAAATTGTTTGTGATGCGAGGcttcaaaatttgtttggtaagcAAAGAGTTGGACATTTCGAAATGTTAAAACTTCTTGAATCCCATTTCCTTCTAAAAGAGGATTCACAGGCTGAAGATCTCCAGGGGAGTGTTGTTGATACTGAAGTTAGTAATTTGGAGGGTGATGGCAATGATGATACATATATTAAAGCTGGAAAAGATAAGAAACGTAAAAGTCGTAAAAAGGGTGGTGAGAGAGGACTTCAATCTAATGTTGATGATTATGCAGCCATTGATAAtcataatattaatttgatttatctaAGACGCAATTTAGTGGAAGAACTACTTGAAGATACGGATAAGTTTCATGATAATGTTGTTGGTTCTTTTGTGCGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAACAGCAGAGCCATATAAAGTTGGTAAAAAGATGACAGATATCTTGTTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATGGATATCATCTCAAATCAGGAGTTCACAGAGGATGAGTGCAAGCGTCTCCGCCAAAGCATAAAATGCGGCCTCATTAATCGAATGACTGtgGGTGACATTCAGGACAAATCATTGACACTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAGCAGAGATAGTACGGCTCAATCACCTTCGTGATAGAGCCAGTGAGAAAGGACGCAAAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAATACCCCTGAAGAACGGCAACGTAGATTGGCGGAAATTCCAGAAATACATGTGGATCCAAAGATGGACCCAAGTTATGAGTCTGATGAAGGAGATGAAATGGAGGATAAAAGACAAGAAAACTTCATGAGACCTAGAGGGTCAACTGCATTTGGAAGGAAGGGGAGAGAAACTGCTTCACCGAGAAGTGGTTCCATTTCAAGTGATTCTTGGAGTGGAACAAGGAGTTATTCTCATGTGAATCAGGAACTCAGCAGAAATTTATCAAATAAGGGATTTTCAGTCAAAGGGGATGGTGTTACTAATGCTAGTGAGGTTTTTAATGATGCTAAATTGCACCAGGGAAGAGATAGGGAATCACAACTATCTAATAGTTGGGAGAGGCAAAAGCTACCGTCTTCAAGCTTGGATGGTGGTGCTAAAAATAAGCCATCGGTAAAATCCGAGTCTTTTTCTACTACTGTGTCAGAAGCTGCCACGGCACCATCTTCTGCCGGAATAGCTGCCCCATCTGTGAAAATTAATGAAACTGAAAAGATGTGGCATTATCAGGATCCATCTGGAAAAGTTCAAGGACCATTTTCCATAACGCAACTTCGCAAATGGAATAATACCGGATACTTCCCTGCTGATTTGAAGATTTGGAAAACCACCGAGAGACAAGATGAATCTATACTCTTAACAGATGTCTTAGCAGGGAAATTTTCGAAGGAACCATCCATGGTGGATAAAACTCCTCCTAAGACTCAAAATCATTCATCCTCATTCTCTAGGATGTCTCCTTTGGCAGCTCAAGGTTTAGCAAGTAAAACATCTCCATTGGCAGTTGAGGTCCCTAAGAATCCTGGAAATGGTTGGGGTTCTGATGCTGGTGTCAGAAATGAATCGACAAATCTTCCTTCGCCTACTCCTCAAACTTCTTCAGGTAAGGTTCATGAGTTTGAAAATTGGTCACCAACACCTGTCCAAATGGCTGGGTCTGTCTTGGGAAACTCATTCACAAACGGTCTTGGAAGTTTGCAGACCTCTGTGGCAGTAAACTCACAACCTGGTATGACTACAAATACCACTCAAGTACATCTTCATGCAACAGCACAGGCTCTGGCTGCAGGTGTTGACATTAAAACAGCAGCTGCGACTTTGCAAAACCAGGTTGGGAATAGCCATAATTCTCATGCTGAAATACAAGGGTGGGGGCAGTCTGTGGTTCCAAAGCCAGAATCACAGGCCTGGGGAGGTACTTCATCTCAAAGGGTAGTAGAACCAACTAATTCTGCTACCATACCTGCCCAGCAAGCTTCCCATGGTCTATGGAGTGATGCTTCATCTGTTCAGAACACTGCCTCATTTAGCAATGGAAATCCAACTGGGAGTTTACCCACACATGGTTTTCAAGGCATGACTGCACCTGAGCCTTGGAGACCACAAGTTTCAGGTAATCAAGCAAACGCCATGGCCCCGCCACCGACGAACATACCCTGGGGTGTAAACATGCCAGGAAATCAGAATATTAGCTGGAGTGGGGCAATACCTGCCAATATGAATGCCAATTGGATGCCTGCACAACTGCCAGCACCGGGAAATGCAACTCCAGGATGGGCAGCTCCTACCCAGGGGCTACCTTCGGTAAATGCAAATGCAGGTAGCTGGGGAGCACCTGGTCAAGGACATCAGCAGGTAAATGCAAATGCAGGTTGGGGTGTGCCTGGTCAAGGGCCAGCACCTGGAAGTGCCAATCCTGCTTGGGCTGCCTCTGCTGGGAACCCAGGCATGTGGAGAAACGAGCAAACTCATAATGGAGACAGGTTTCCCAACCAAGGGGAACGTGGTATGCGCAGTGGAGATTCTGGCCGTGGAGGTAAATCTTGGAACAGGCAGTCATCATTTAGAAGCGGAGGAGGCAGAGGGGGTTCTTCTAGACCTCCCGGTGGGGGACAAAGAGGAATCTGCAGGTATCATGAGAGTGGAAATTGCAGGAAGGGTGCTTCATGTGATTATCAACACAATTAA 4404 0.4233 MAAEEDEAPLNQSPPPLQQPSDSPLPDLPINADIHQAGELEAVVAGETSDAAAVNTEVVVDDVAPAEGGEMHAMDGIEDEIVVVEKKEDEGTEVDLEPENVEEAETNLIIGEEEVQIRDDENTDEAPPVGDDEEEEDNDEKKGEEENEKEDEEGDEIEDEKVEEGDEIEEDEKVEEGDGIEEDVKEEEGDEEIEEAGEQEQEQEEEEEEDDDEETEVDGDGGLTEDKEAAEDMEVTEEEQSVSGGKRKRGNAKTSKSTGRVPSKKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCINRDEAFFQSKGKWNCGWHLCSNCEKNAYYLCYTCTFSLCKGCIKDAVMLCVRGNKGFCETCMRTVMLIEQNEEGNNMAQVDFDDKNSWEYLFKDYYVDLKGKLSLTSDELAQAKNPWKGSGKLPSKEESPDELFDATNDRGSDSDSSYEKADLSRSKKRKSKKRAKSRSKERNSHSAATAHGADGPSTDESSEWASKELLEFVMHMKNGDKSMLSQFEVHALLLEYIKINKLRDPRRKSQIVCDARLQNLFGKQRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEVSNLEGDGNDDTYIKAGKDKKRKSRKKGGERGLQSNVDDYAAIDNHNINLIYLRRNLVEELLEDTDKFHDNVVGSFVRIRISGSGQKQDLYRLVQVVGTCKTAEPYKVGKKMTDILLEILNLNKTEIVSMDIISNQEFTEDECKRLRQSIKCGLINRMTVGDIQDKSLTLQAVRVKDWLEAEIVRLNHLRDRASEKGRKKELRECVEKLQLLNTPEERQRRLAEIPEIHVDPKMDPSYESDEGDEMEDKRQENFMRPRGSTAFGRKGRETASPRSGSISSDSWSGTRSYSHVNQELSRNLSNKGFSVKGDGVTNASEVFNDAKLHQGRDRESQLSNSWERQKLPSSSLDGGAKNKPSVKSESFSTTVSEAATAPSSAGIAAPSVKINETEKMWHYQDPSGKVQGPFSITQLRKWNNTGYFPADLKIWKTTERQDESILLTDVLAGKFSKEPSMVDKTPPKTQNHSSSFSRMSPLAAQGLASKTSPLAVEVPKNPGNGWGSDAGVRNESTNLPSPTPQTSSGKVHEFENWSPTPVQMAGSVLGNSFTNGLGSLQTSVAVNSQPGMTTNTTQVHLHATAQALAAGVDIKTAAATLQNQVGNSHNSHAEIQGWGQSVVPKPESQAWGGTSSQRVVEPTNSATIPAQQASHGLWSDASSVQNTASFSNGNPTGSLPTHGFQGMTAPEPWRPQVSGNQANAMAPPPTNIPWGVNMPGNQNISWSGAIPANMNANWMPAQLPAPGNATPGWAAPTQGLPSVNANAGSWGAPGQGHQQVNANAGWGVPGQGPAPGSANPAWAASAGNPGMWRNEQTHNGDRFPNQGERGMRSGDSGRGGKSWNRQSSFRSGGGRGGSSRPPGGGQRGICRYHESGNCRKGASCDYQHN 1467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00088 1467 ProSitePatterns Zinc finger PHD-type signature. 272 332 IPR019786 -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 422 453 - -
Tsu07g00088 1467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 363 IPR013083 -
Tsu07g00088 1467 SMART swib_2 501 572 IPR019835 -
Tsu07g00088 1467 SMART rtf1 628 738 IPR004343 GO:0003677
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 808 873 - -
Tsu07g00088 1467 Gene3D - 977 1036 IPR035445 -
Tsu07g00088 1467 Coils Coil 186 216 - -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 908 922 - -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 1 33 - -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 923 947 - -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 1325 1467 - -
Tsu07g00088 1467 SUPERFAMILY Plus3-like 629 757 IPR036128 GO:0003677
Tsu07g00088 1467 ProSiteProfiles Plus3 domain profile. 628 761 IPR004343 GO:0003677
Tsu07g00088 1467 ProSiteProfiles Zinc finger C3H1-type profile. 1442 1467 IPR000571 GO:0046872
Tsu07g00088 1467 ProSiteProfiles GYF domain profile. 976 1030 IPR003169 GO:0005515
Tsu07g00088 1467 Coils Coil 140 160 - -
Tsu07g00088 1467 Pfam SWIB/MDM2 domain 494 567 IPR003121 -
Tsu07g00088 1467 SUPERFAMILY SWIB/MDM2 domain 491 568 IPR036885 -
Tsu07g00088 1467 CDD PHD5_NSD 271 316 - -
Tsu07g00088 1467 ProSiteProfiles Zinc finger PHD-type profile. 269 335 IPR019787 -
Tsu07g00088 1467 Pfam GYF domain 979 1020 IPR003169 GO:0005515
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 94 109 - -
Tsu07g00088 1467 SUPERFAMILY FYVE/PHD zinc finger 268 322 IPR011011 -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 858 873 - -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 808 841 - -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 1417 1432 - -
Tsu07g00088 1467 ProSiteProfiles SWIB/MDM2 domain profile. 486 569 IPR003121 -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 412 489 - -
Tsu07g00088 1467 CDD GYF 976 1031 IPR003169 GO:0005515
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 1088 1110 - -
Tsu07g00088 1467 CDD SWIB-MDM2_like 492 567 - -
Tsu07g00088 1467 Pfam Plus-3 domain 633 736 IPR004343 GO:0003677
Tsu07g00088 1467 Gene3D - 630 758 IPR036128 GO:0003677
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 905 947 - -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 125 221 - -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 454 468 - -
Tsu07g00088 1467 Gene3D SWIB/MDM2 domain 481 577 IPR036885 -
Tsu07g00088 1467 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 73 1467 - -
Tsu07g00088 1467 SMART PHD_3 271 317 IPR001965 -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 594 618 - -
Tsu07g00088 1467 SUPERFAMILY GYF domain 968 1029 IPR035445 -
Tsu07g00088 1467 SMART gyf_5 977 1032 IPR003169 GO:0005515
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 1073 1110 - -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 87 262 - -
Tsu07g00088 1467 PANTHER UNCHARACTERIZED 73 1467 - -
Tsu07g00088 1467 MobiDBLite consensus disorder prediction 1333 1363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00088 Tsu-Chr7 561355 574362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00088 269 324 PHD Transcription Factor Family AT5G36670 48.214 4.65e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Tsu07g00088 Plus-3 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00088 - - mtr:MTR_3g117490 2002.25