Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00045 ATGGGAAGGTCCCCTTGCTGCGAGAAAGGTCATACAAACAAAGGAGCATGGagcaaagaagaagatgagCGGCTCATAGCTTATATTACAGCTCACGGTGAAGGATGTTGGCGATCTCTCCCCAAAGCCGCTGGTCTTCTCCGCTGTGGTAAGAGTTGCCGTCTCCGTTGGATCAACTATCTTCGCCCTGACCTCAAACGTGGCAATTTCACCCAACTAGAAGATCAACTCATCATCAAACTCCACACTCTCCTCGGTAACAAGTGGTCTCTAATAGCTGGTAGGTTGCCAGGAAGAACAGACAATGAAATAAAGAATTACTGGAACACGCATTTAAGAAAGAAGCTTTTGAGCAGAGGAATTGATCCTGCAACTCACATGCCTCTCAACCAAACTTCCAAACAAGAGGAATGCTGCCCTGATTTGAATCTTGAGCTAACCATTAGTCCACCACGTGATCACCCTCACCAGCTGCAACAGTCATTCAGTAGTGGCACCAGCAGTAGTACTGCTACAGCTTAG 522 0.4579 MGRSPCCEKGHTNKGAWSKEEDERLIAYITAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTQLEDQLIIKLHTLLGNKWSLIAGRLPGRTDNEIKNYWNTHLRKKLLSRGIDPATHMPLNQTSKQEECCPDLNLELTISPPRDHPHQLQQSFSSGTSSSTATA 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00045 173 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Tsu07g00045 173 CDD SANT 69 112 IPR001005 -
Tsu07g00045 173 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu07g00045 173 MobiDBLite consensus disorder prediction 149 173 - -
Tsu07g00045 173 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 133 - -
Tsu07g00045 173 CDD SANT 16 61 IPR001005 -
Tsu07g00045 173 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu07g00045 173 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu07g00045 173 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 61 IPR017930 -
Tsu07g00045 173 MobiDBLite consensus disorder prediction 153 173 - -
Tsu07g00045 173 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 133 - -
Tsu07g00045 173 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu07g00045 173 Gene3D - 14 66 - -
Tsu07g00045 173 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu07g00045 173 Gene3D - 68 140 - -
Tsu07g00045 173 SMART sant 13 63 IPR001005 -
Tsu07g00045 173 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00045 Tsu-Chr7 386800 387825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00045 1 157 MYB Transcription Factor Family AT4G38620 71.687 2.33e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g00045 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00045 K09422 - gmx:778031 289.271