Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00037 ATGGCCACTTCCTGGCCATCTCTTACGATGGAAAATCATGACTTTGGGTATAGAGAATGGGCCAAACATGGAAGTTGTTCCGAGATAAAACCTTGGCAAGCATATTTCCGAAGAACCATACGCCTATATAGAACTGTAAACGTCTTTTCTGTGCTTGAGGAAGCTAATATACTTCCAATCTATATCAAGGAACCCGCTGAATACCATTATAGAAACCGTTTTCAGAATGGTAGTTATTTCCTTCCAATGAAAGAGGGATTAGTTACGGTTCAGATACAATTATTTTGTGACTTTGGTTTTCTCTACGAAATCAAGATTGGAAGTATATTAGCTTCCTCAAGCACAGAAAAGACGTTTACAGTTCTATATAGGCGTATGGTTCTTCGGAAATATGCTTGCCAAGGTTTTATCTCGGAACAACTTCCATGTTTGGCCCATTCTCTATACCAAAAGTCCCGATTTTCCATCGTAAGAGATGGCCAGGAAGTGGCCATAGCTTCCTCTAAATCATCAGAGAACTACACaacaacaaagaagaagaagaaaggattATCCGTTGCTTCAGGTGAAGTATCCCATGAAGTATCCGTTGCCGTGCTGAATGGTTTACAGATGTTGAAACAATATAGGAAAATCTCCAAAACAATTCCAATCCTATGGAACATTCTTAAGGTTGCAAAGGAACCCTTTGATGCAACTTTAGGCAATGTTGTAGATGATTATGCCTATGGACATTGGGGAAATGTTGTACTGAAGCATTTACACCAGTCATTTGGCAGTGTCGATGGTGGCATAGGGGAAGCACACATTGATCCTTTATCTCATAGAACACGGACTGAAGCTAAGGGGTATGCACCTGTCATGCAAAATGGATCTTCTAGTGAATCCCATGGCCATGGTGGTACTGAGATGTGTCAGCGTATGCTATGCGAAGTATTAACCTCACAGATGTTCAATTCATTATGCGAGACTTTATTTGAAAATTTCCAAGGAATTAAGCCTGAAAGTGTAGTTGATTTTAGCGTCGTGATCTCAAGGATGAAGCAGAAAACTTCTGAAGAATCACCTGAACTTTTCTTGTCAGATATTCAACAGGTTGCCAAGGAACTCTTTGATGCAACTTTAGGCAATGCTGCAGATGGTTATGCCTATAGACATTGGGGAAATGTTGTACTGAAGCATTTACATCAGTCATTTGGCAGTGTCGATGGTGGCATAGGGGAAGCACAAATTGATCAAATTGATCGTTTATCTCATAGAACACGGACTGAAGCTAACGGGTATGCATCTGTCATGCAAAATGGATCTTCTAGTGAATCCCATGGCCATGGTGTTAATGAGATGTGTCAGCGTATGCTATGCGAAGTATTAACCTCACAGATGTTCAATTCATTATGCGAGACTTTATTTGAAAATTTCCACGGAATGAAGCCTGAAAGTGCAGTTGATTTTAGTGTCGTGATCTCAAGGATGAAGCAGAAAATTTATGAAGAATCACCTGAACTCTTCTTGTCAGATATTCAACAGGTCTGGAGAAAGCTTCAAAATACTAGTAACAAAATATTTGCATTTTCTAAGAGCCTGATCGACTTGTCAACTACTTCTTACGCTGAGCTGGTTGGAAGTTCAGAGCAGAGCACATTTGAAGATGAAAAGCAAGTGGAATCAGACGCTCACATGAAACTAGAGCAGAAGGAAAAGTTAGATGGCACAGACTGTCTGGTCTGTGATTCATGTGAGAAGGTGTACCATTTGTCCTGTTTTGAGCCTGCAATGAAAGAAATACCTCACAAAAGCTGGTATTGTGCTGATTGCACCACAAGTGGCATTGGATCTCCACATGAGAATTGTGTAGTATGTGTGAGGTTCAATGGCAAAAAGACTCCCAATAAAATAATTGGTGATGAAAGTCTCCCTACAAATGAGGAAacatttgatgaatttgaagagaaTTCAAATAGCAGCTATGGTGGGATTCAAGTATCTACACGTAAGGGAAAAACATTCTATTGCAGAATGTGTGGAAATGAAGTCGAAGTCAAAGGTGAAAAAATAAGAGAATCCGGTCACCCTTATTGCCACACTCAATATTACCATGCAAGGTGTTTGACAAgcaaacaattaaatatatatagttatgcGTGGTACTGCCCTTCTTGTATATGCCAAGCTTGCCTCACCAATCAAGATGATGACCGAATTGTCCTCTGTGATGGCTGCGATCATGGATATGACATCTATTGCATGAAACCTCCACTAGATTCTATTCCACAAGGGAAATGGTTCTGCAGAAAATGTGATGCTGGACTCAAGGCAATATCCCAGGCATAA 2331 0.3925 MATSWPSLTMENHDFGYREWAKHGSCSEIKPWQAYFRRTIRLYRTVNVFSVLEEANILPIYIKEPAEYHYRNRFQNGSYFLPMKEGLVTVQIQLFCDFGFLYEIKIGSILASSSTEKTFTVLYRRMVLRKYACQGFISEQLPCLAHSLYQKSRFSIVRDGQEVAIASSKSSENYTTTKKKKKGLSVASGEVSHEVSVAVLNGLQMLKQYRKISKTIPILWNILKVAKEPFDATLGNVVDDYAYGHWGNVVLKHLHQSFGSVDGGIGEAHIDPLSHRTRTEAKGYAPVMQNGSSSESHGHGGTEMCQRMLCEVLTSQMFNSLCETLFENFQGIKPESVVDFSVVISRMKQKTSEESPELFLSDIQQVAKELFDATLGNAADGYAYRHWGNVVLKHLHQSFGSVDGGIGEAQIDQIDRLSHRTRTEANGYASVMQNGSSSESHGHGVNEMCQRMLCEVLTSQMFNSLCETLFENFHGMKPESAVDFSVVISRMKQKIYEESPELFLSDIQQVWRKLQNTSNKIFAFSKSLIDLSTTSYAELVGSSEQSTFEDEKQVESDAHMKLEQKEKLDGTDCLVCDSCEKVYHLSCFEPAMKEIPHKSWYCADCTTSGIGSPHENCVVCVRFNGKKTPNKIIGDESLPTNEETFDEFEENSNSSYGGIQVSTRKGKTFYCRMCGNEVEVKGEKIRESGHPYCHTQYYHARCLTSKQLNIYSYAWYCPSCICQACLTNQDDDRIVLCDGCDHGYDIYCMKPPLDSIPQGKWFCRKCDAGLKAISQA 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00037 776 SUPERFAMILY Ribonuclease Rh-like 1 59 IPR036430 GO:0003723|GO:0033897
Tsu07g00037 776 SUPERFAMILY FYVE/PHD zinc finger 570 608 IPR011011 -
Tsu07g00037 776 PANTHER HISTONE ACETYLTRANSFERASE 423 773 - -
Tsu07g00037 776 SUPERFAMILY FYVE/PHD zinc finger 721 770 IPR011011 -
Tsu07g00037 776 PANTHER HISTONE ACETYLTRANSFERASE 197 440 - -
Tsu07g00037 776 Pfam Ribonuclease T2 family 1 59 IPR001568 GO:0003723|GO:0033897
Tsu07g00037 776 PANTHER D4, ISOFORM A 197 440 - -
Tsu07g00037 776 SMART PHD_3 670 721 IPR001965 -
Tsu07g00037 776 SMART PHD_3 724 767 IPR001965 -
Tsu07g00037 776 SMART PHD_3 564 606 IPR001965 -
Tsu07g00037 776 Gene3D - 471 608 - -
Tsu07g00037 776 Gene3D - 1 106 IPR036430 GO:0003723|GO:0033897
Tsu07g00037 776 PANTHER D4, ISOFORM A 423 773 - -
Tsu07g00037 776 Pfam PHD-finger 569 607 IPR019787 -
Tsu07g00037 776 Pfam PHD-finger 721 767 IPR019787 -
Tsu07g00037 776 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 772 IPR013083 -
Tsu07g00037 776 ProSiteProfiles Zinc finger PHD-type profile. 719 769 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00037 Tsu-Chr7 325430 331559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00037 721 766 C2H2 Transcription Factor Family AT3G01460 47.826 5.31e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu07g00037 Ribonuclease_T2 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00037 - - gmx:100795906 508.064