Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00029 ATGAAGGCATTCGTGAAAGCTCAAAAGTCAAATGCGTACTTCAAGAGGTATCAAGTTAAGTttaagagaagaagagagggaAAGACTGATTACAGAGCCAGGATTCGTTTGATTAATCAGGACAAAAACAAGTACAACACTCCTAAATATCGTTTCGTCGTCCGATTCacAAACAAGGACATTGTTGCTCAAATCGTCTCTGCTAGCATTGCCGGTGATATTGTTCTTGCTGCAGCTTATGCACACGAGCTTCCCCATTTTGGCCTTGAAGTAGGACTTACAAACTATGCTGCAGCCTATTGCACTGGTCTCCTTCTGGCTCGTAGAGTTCTTAAAACTCTTGAGATGGACGAGGAGTATGAGGGCAATGTAGAGGCTACCGGAGAGGATTATTCAGTTGAACCAGCTGAGTCCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTGTTAAGACCACAACTGGCAACCGCGTCTTTGGTGCACTCAAGGGAGCTTTGGATGGAGGTTTGGATATTCCTCACAGTGACAAAAGGTTTGCTGGTTTTGATAAGGAGAAGAAAGAGCTTGATGCTGAGGTTCACAGAAAGTATATCTTTGGCGGACATGTTGCTGCCTATATGAAGacATTGATCGAAGATGAACCAGAAAAATACCAAACACACTTCAGTGAATATATTAAGCGCGGTATTGAAGCCGATGGAATTGAGGAACTGTACAAAAAGGTTCATGCTGCTATTCGTGCTGATCCATCAATCAAAAAGTCTGGGAAGCAGCCACCAAAGGAACACAAGAGGTACAACCTGAAGAAGCTCACATACGAGGAGAGGAAGACAAAGTTGATTGCCCGCCTTCAAGCTCTCAATTCTGCAGCCGGAGAGAGTGAAGATGACGATGAGTGA 903 0.4341 MKAFVKAQKSNAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVLAAAYAHELPHFGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPAESRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYIFGGHVAAYMKTLIEDEPEKYQTHFSEYIKRGIEADGIEELYKKVHAAIRADPSIKKSGKQPPKEHKRYNLKKLTYEERKTKLIARLQALNSAAGESEDDDE 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00029 300 Gene3D - 2 292 - -
Tsu07g00029 300 PANTHER RIBOSOMAL PROTEIN L5-RELATED 3 299 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu07g00029 300 Pfam Ribosomal L18 C-terminal region 236 289 IPR025607 -
Tsu07g00029 300 CDD Ribosomal_L18_L5e 42 171 - -
Tsu07g00029 300 Hamap 50S ribosomal protein L18 [rplR]. 15 247 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu07g00029 300 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 15 176 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu07g00029 300 PANTHER - 3 299 - -
Tsu07g00029 300 SUPERFAMILY Translational machinery components 12 253 - -
Tsu07g00029 300 MobiDBLite consensus disorder prediction 251 270 - -
Tsu07g00029 300 PRINTS Ribosomal protein L5 signature 165 184 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu07g00029 300 PRINTS Ribosomal protein L5 signature 207 227 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu07g00029 300 PRINTS Ribosomal protein L5 signature 44 63 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu07g00029 300 PRINTS Ribosomal protein L5 signature 21 40 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu07g00029 300 PRINTS Ribosomal protein L5 signature 145 164 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu07g00029 300 PRINTS Ribosomal protein L5 signature 85 105 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00029 Tsu-Chr7 289556 291797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00029 3 293 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 83.849 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00029 K02932 - gmx:100805868 545.428