Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00024 ATGGTGTTGGTGGGTGTTTGCGGAAAGGCGGTGGTGTTTAGTATCGGAGGAGTCAGCAGAGTCAGACCCAAACCCACCACACACTCTCTCTTTGTCGTTTCCAATTCCACCGATAGCCAagacacaacaacaacaactccgACCACCACGAGTTTTGGAAGACTAAAAGTCCAGAAAGTGAAGGCTCTCATACAAAGAACCAAGCAAAACACTAGACGTGAACGAGTAatagtagaagaagaagatgacCGCAGTACTTCTCAAAGACAAAGACGTTCTCATCCTCCTCCTGATTCAAGAAGAGGATGGGGAGATAATAAAGTTACTCAAACTCAACAATTGACAGAGCCTGATACCAACTTTTTCAGTCTCAAGTCATTTAAAGACATTGGGTGCGCTGATTTTATGATTCAATCCCTTCATAACCTCTCTTTAACACGCCCTTCCAATATACAGGCCATGTCTTTTCCTCCCATTATTGCCAGAAAGTCTTGTATCATTGCTGACCAGAGTGGTTCTGGAAAGACATTAGCTTATCTTCTACCAATCATTCAACGTCTCAGGCAACAAGAActacagcaacaacaaccacctCATCATAATTCACAATCTCCTACTGTTCTTATACTCGCTCCAACATCAGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCATTGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTCACTGGAGGCTTTCGACAAAAAACTCAACTCGATAGTTTAAAGCAGGGCGTTGATGTCTTAATAGCTACACCTGGCCGTTTCCTTTTCCTCATAAAGGAAGGCTTCTTGCACTTAACAAATCTAACATGTGCTGTGTTGGATGAGGTAGACATACTCTTTGGGGATGAGGACTTCGAAAAGGCTCTGCAATGCTTGATTAGTTCTTCGCCGGTTGACACACAGTATTTATTTGTGACTGCAACTTTACCAAAAAATGTTTACAGCAAACTGGTTGAAGTTTTTCCTGATTGTGAAATGGTCATGGGACCTAGTATGCATCGAATAAGCTCTCGCCTTGAAGAGATAATAATAGATTGCAGTGGGGAAGATGGACAAGAAAAAACTATCGACACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGAAGCTTGCGGAGAAGAATCGTGTCCCAAGAACTATTGTGTTCTGTAACAAAATTGAAACGTGCAGAAAAGTTGAAAATGCATTAAAGCGTTTTGATAGAAAGGGAGATCGCATGCAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGTATGAAGGAGTTTACACGTTCTCCATCAAAAGAAGTGTCCCAATTTATGGTATGCACCGACAGAGCATCGCGAGGAATTGACTTCACTAGAGTGGATCATGTAATACTTTTTGACTACCCACGTGATCCAAGCGAATATGTACGGCGTGTTGGAAGAACTGCAAGAGGTGCCAGCGGACAGGGCAAGGCATTTATCTTTGTAGTTGGCAAGCAAGTATCCCTTGCAAGCAAAGTAATGGAAAGAAATCGGAAGGGTCATCCACTTCATGATGTACCTTCGGCTTATGAGTATTGA 1599 0.4065 MVLVGVCGKAVVFSIGGVSRVRPKPTTHSLFVVSNSTDSQDTTTTTPTTTSFGRLKVQKVKALIQRTKQNTRRERVIVEEEDDRSTSQRQRRSHPPPDSRRGWGDNKVTQTQQLTEPDTNFFSLKSFKDIGCADFMIQSLHNLSLTRPSNIQAMSFPPIIARKSCIIADQSGSGKTLAYLLPIIQRLRQQELQQQQPPHHNSQSPTVLILAPTSELASQVLDNCRSLSKSGVPFKSMVVTGGFRQKTQLDSLKQGVDVLIATPGRFLFLIKEGFLHLTNLTCAVLDEVDILFGDEDFEKALQCLISSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMVMGPSMHRISSRLEEIIIDCSGEDGQEKTIDTAFLNKKAALLKLAEKNRVPRTIVFCNKIETCRKVENALKRFDRKGDRMQVLPFHAAMTQESRLASMKEFTRSPSKEVSQFMVCTDRASRGIDFTRVDHVILFDYPRDPSEYVRRVGRTARGASGQGKAFIFVVGKQVSLASKVMERNRKGHPLHDVPSAYEY 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00024 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 503 IPR027417 -
Tsu07g00024 532 Pfam DEAD/DEAH box helicase 150 325 IPR011545 GO:0003676|GO:0005524
Tsu07g00024 532 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 339 IPR014001 -
Tsu07g00024 532 MobiDBLite consensus disorder prediction 66 114 - -
Tsu07g00024 532 MobiDBLite consensus disorder prediction 67 101 - -
Tsu07g00024 532 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 33 531 - -
Tsu07g00024 532 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 374 532 IPR001650 -
Tsu07g00024 532 CDD SF2_C_DEAD 351 502 - -
Tsu07g00024 532 SMART helicmild6 402 492 IPR001650 -
Tsu07g00024 532 Pfam Helicase conserved C-terminal domain 375 491 IPR001650 -
Tsu07g00024 532 CDD DEADc 136 325 - -
Tsu07g00024 532 Gene3D - 65 339 IPR027417 -
Tsu07g00024 532 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 33 531 - -
Tsu07g00024 532 SMART ultradead3 144 354 IPR014001 -
Tsu07g00024 532 Gene3D - 345 525 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00024 Tsu-Chr7 245937 249182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00024 105 500 Eukaryotic Initiation Factors Gene Family AT3G19760 26.700 4.10e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00024 K13179 - gmx:100780849 680.633