Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g00022 ATGAAGGTGTCTAGCCCGACACAGAAGCAATCTGTTGGGGATCGTCACATGATCTCACCCACTCGCCACAATATGTCTAGATCAGCTAGGAGGAGGAAAAACAGTGGTCATTGGTGGTTGTCATCAATATCATGGATGAAGAAGGATGCTGACTCATATGCCACAACTCATCAAACTCAGCTCTCTTCCAATAGTCCTTACTACCAGGGTCTCACCGATCAATCTCTTGCTATTACTCATGAAGACTATGAAGACGACGATGACGAcgataacaacaacaacaacaacaacaacaatatctCTTCACCACTACAACCTCTCCTCCTTTCATCATCCCCCCACAGTAGTCCTTACTACAAAGGTCTTACCGATTATTCTCTTGTAGTCGATGCCTCTTGGGCTGCTCGTCATTCACATCCTCATCTCCATCCCCATCACAACTCACCCCTTTCTTGTTACCACGACTCAAGTCCATACTATAGGGGTCTCATTGCTCTTCCTGTTCCTACCTCCCCCTCCTCTCTATTCTCCCTCAACATCAATTTCAAAACCACCACTGATGCCGCCCAATCATCAACTCATGATTTTGTTGTCTTTTTAAGTCCAGAAGATCAGTCACTGATGGTAACAGAGCCAAAAGCAACTTTAGATGATGAAATGGAGTTGATCCATCCTGATATCCAAGGGAAGCCTTTGAGGGTTAAAGATAAGTTGTCATCACAAGCAACTTTGGAAGAGATGGATGATGTTGAAGGGGGGAAGCCTTTGAGGGTTAATTATGAATCAGAAACAGTTCCAGAGAAAACAATTTTGGAAGATGTTGTCTTGTTGGTTGAAGAGCATAAGAAGTCTTTGAGTGAGGGAGTAGCATCAGATTCTGAGACAGTATTGTTACAACAAATAAATGCTGACAAAACAGATTTGGGTTTGGAGGAGGAGATGGAATTGGTGATTGAACAAGAGAAGCCATTGAGAGAGAGTTGTGTATCACAAGTTGGGAATGAGAACGTACTAATAAATATAGATTTGAAAGAGGAACTCAAAGACTTTTGGTTGGGTGGTCAAAAGACAGTTTATGAACAAACAGTGTCACCGGAATTACCTTGTGAGCACAAGTTGAAGGACACAACTGTGGAAGGAAATCTGTATGAGTATCTGTGGGCAACCAAATACCAGCCCAAGACCTTGGATGAATTCATCTGTAACAGAGATAAAGCACTTCAGCTGAAAGAATTGGTACAAGGTGGGTGCGGCTGCaatcattttatatttgaaGGACCCCCAAATGTAGGAAAAAGATCCATGATACGAGCTATGCTTCGAGCGGTATTTGGCGCTGACGGAGTGCAGGTATATTCATACTTCATTCATGGAGAAATGGTTGAAAACCTGCAACTGCGCCTAAAGAAATCACTCCATCATGTTGAGGTGAATCTGTCAGAGGCAAAGGGATATGAAAAACATGTGATTTCCGAGTTATTCAAGGAAACATATGGTAAAGTGATAAATAGCTCATTGCCTTGTAGCCCAGAAAACTGTCAAGcaaTCATTTTGTACGATGCGGAGAAGCTATCATTAGAATCGGTGTTGTATATAAAGTGGATGGTAGAAAAGTATAAAGGGTGTAATAAACTGTTCTTTTGCTGCTCTGATGAATCAAGGCTACAGCCTATCCAATCACATTGCACCACTGTCCGCCTTTCATCACCATCAACACAACAGATTGTGAAGATTTTGGAATGGATTGTAGAAGAAGAAGGAATAAAATTATCACGCGAGTCAATCAAGAAGATAATTTTGAGGTCCAAAAACAATCTCCGTCAAGCCATTCGTTCATTGGAGGCCACTTACCGACACAAGAATGCCCTCAGCGAGGATGAGTTCATTTTAACTGGATGGGAGGATGATATTTTGAATATTGCTAAAAATATAATCAGAGAGCAGAGTCCAAGACAGCTGTACGCCATTCGTAGAAAGCTTCAAAGTCTTATGATTCATGACGTTCCTCCTGAGTTTATCTACAAGTCTTTGGTAGACAACTTAACGAGTCTAGTCGATGACTCACTATGCTCAGGGGTTGCCAAGCTTCACAAGGAGTACACCAAAGGTAGTGAAATCAAATTTGAAAGTGTGAAACATTATGCTCAAAACAAACAGGGAGGATCCGATGAAAGGAGCAATGAACTAACAAAAAAGAATGCAATGAACTACTTAAAAGTTGAAGAATTCATAGCAAAATTCATGAGCTGGTACAAGAATTTGTGTAAAAGTGATGATCATGTGCAACTTATTGCTGGGCCAGGAACATAG 2310 0.4065 MKVSSPTQKQSVGDRHMISPTRHNMSRSARRRKNSGHWWLSSISWMKKDADSYATTHQTQLSSNSPYYQGLTDQSLAITHEDYEDDDDDDNNNNNNNNNISSPLQPLLLSSSPHSSPYYKGLTDYSLVVDASWAARHSHPHLHPHHNSPLSCYHDSSPYYRGLIALPVPTSPSSLFSLNINFKTTTDAAQSSTHDFVVFLSPEDQSLMVTEPKATLDDEMELIHPDIQGKPLRVKDKLSSQATLEEMDDVEGGKPLRVNYESETVPEKTILEDVVLLVEEHKKSLSEGVASDSETVLLQQINADKTDLGLEEEMELVIEQEKPLRESCVSQVGNENVLINIDLKEELKDFWLGGQKTVYEQTVSPELPCEHKLKDTTVEGNLYEYLWATKYQPKTLDEFICNRDKALQLKELVQGGCGCNHFIFEGPPNVGKRSMIRAMLRAVFGADGVQVYSYFIHGEMVENLQLRLKKSLHHVEVNLSEAKGYEKHVISELFKETYGKVINSSLPCSPENCQAIILYDAEKLSLESVLYIKWMVEKYKGCNKLFFCCSDESRLQPIQSHCTTVRLSSPSTQQIVKILEWIVEEEGIKLSRESIKKIILRSKNNLRQAIRSLEATYRHKNALSEDEFILTGWEDDILNIAKNIIREQSPRQLYAIRRKLQSLMIHDVPPEFIYKSLVDNLTSLVDDSLCSGVAKLHKEYTKGSEIKFESVKHYAQNKQGGSDERSNELTKKNAMNYLKVEEFIAKFMSWYKNLCKSDDHVQLIAGPGT 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g00022 769 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 138 755 - -
Tsu07g00022 769 MobiDBLite consensus disorder prediction 93 107 - -
Tsu07g00022 769 SUPERFAMILY post-AAA+ oligomerization domain-like 632 700 IPR008921 GO:0003677|GO:0006260
Tsu07g00022 769 Gene3D - 571 631 - -
Tsu07g00022 769 MobiDBLite consensus disorder prediction 82 107 - -
Tsu07g00022 769 CDD HLD_clamp_RFC 570 626 - -
Tsu07g00022 769 MobiDBLite consensus disorder prediction 1 31 - -
Tsu07g00022 769 Coils Coil 603 623 - -
Tsu07g00022 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 626 IPR027417 -
Tsu07g00022 769 MobiDBLite consensus disorder prediction 1 17 - -
Tsu07g00022 769 Gene3D - 385 570 IPR027417 -
Tsu07g00022 769 Gene3D - 632 751 - -
Tsu07g00022 769 PANTHER OS10G0574500 PROTEIN 138 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g00022 Tsu-Chr7 235696 240402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g00022 386 754 Core DNA Replication Machinery Family AT5G27740 31.034 9.69e-49 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g00022 K10756 - gmx:102664389 624.009