Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu06g03850 | ATGATGGTTGGTGGGATTCCCATATCCACCCCAAAGCTACCAATGCCTATCAATCTCAATGGCAGCAATGCTGCATATCATTCGTTTCGCCGAACAAAGACAATGACGACACACGAAAAACCATTATTGATAGAAGCCGGAGAACCCTCAGATGGAAGCAAAAAGACAAGCAAGGTTCCGAAAGGATACATTGCTGTTTATGTCGGGCTGGAGTTTAGAAGGTTTGTGATTCCAATAAGTTTCTTGAGCATGCCTGAGTTGAAGGATTTGATGGATGACGTGGCTGAGGAGTTTGGTTCTGATTATCATGCTGATGGTGCTCTTCACATTCCATGTGATGAAGATTATTTTCGCAATGTTTTGATTCATTGTTTTGCAACACAACGAAGGGTATCTTCTAAGAATTATAAGATCAAACTTGGTAAAAAGACTCCCTTAATACACTAG | 447 | 0.4094 | MMVGGIPISTPKLPMPINLNGSNAAYHSFRRTKTMTTHEKPLLIEAGEPSDGSKKTSKVPKGYIAVYVGLEFRRFVIPISFLSMPELKDLMDDVAEEFGSDYHADGALHIPCDEDYFRNVLIHCFATQRRVSSKNYKIKLGKKTPLIH | 148 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu06g03850 | 148 | Pfam | Auxin responsive protein | 39 | 121 | IPR003676 | GO:0009733 | |
| Tsu06g03850 | 148 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 39 | 134 | IPR003676 | GO:0009733 | |
| Tsu06g03850 | 148 | PANTHER | OS02G0143300 PROTEIN | 39 | 134 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu06g03850 | Tsu-Chr6 | 50585385 | 50585831 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu06g03850 | 59 | 121 | Calmodulin-binding Proteins | AT3G43120 | 52.381 | 2.83e-15 | 67.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu06g03850 | K14488 | - | mtr:MTR_4g005310 | 219.935 |