Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03833 ATGACTATCCAAAAAATGGAAGAGATCATTTTCAAGTCTAAGCTTCCTGATATCTACATTCCAAAACACCTTCCTCTTCATTCATATTGCTTTGAGAATCTATCCGAGTATGGATCACGTCCATGCCTCATTGATGCTCCAACCGGCGAAATCTACACCTACTATGATGTCGAACTTGCTTCACGAAGAGTCGCATCCGGTCTCAACAAATTAGGCATCGGACAAGGCGATGTCATCATGGTTCTTCTCCCTAATTGTCCAGAATTCGTGTTTTCTTTTCTCGGTGCTTCTTTCCGCGGCGCTGTAATGACCGCCGCAAATCCTTTCTTCACCTCAGCTGAAATTGCTAAACAAGCAAAAGCCTCCAATGCTAAGTTGCTTGTAACACAAGGTTGTTACTTTGACAAAGTTAAGGATTTGGAAAATGTGAAGCTGGTTTTTGTGGATTCTTCACCAGAAGGAGAAAATCATATGCATTTCCGTGAGCTGGCACAAGCTGATGAGAATGAAATTGAAGAgGTAAAGATTAACCCTGATGATGTAGTTGCTTTGCCATATTCATCTGGAACAACAGGGTTACCTAAAGGTGTTATGCTAACACACAAAGGATTAGTGACAAGTGTAGCACAACAAGTTGATGGTGAAAATCCAAATCTATATTACCATTCTGAGGATGTCATACTCTGTGTTCTTCCAATGTTTCATATCTACTCACTCAACTCTGTTTTACTCTGTGGTTTGAGAGCCAAAGCTTCAATTCTGTTAATGCCAAAGTTTGATATTCATGCATTTTTTAGCCTTGTTCATAAATACAGAGTGACTATTGTTCCTGTTGTGCCACCAATTGTTTTGGCTATTTCTAAGTCACCTGAACTTGATAACTATGACCTTTCATCGATAAGGGTTTTGAAATCTGGTGGTGCTCCACTTGGTAAGGAACTTGAGGACACTGTTAGAGCCAAATTTCCTAAAGCCAAACTTGGACAGGGATATGGGATGACAGAGGCAGGACCAGTTTTATCAATGTGTTTGTCATTTGCAAAAGAAGCAATAGATGTGAAAGCAGGTGCATGTGGAACTGTTGTAAGAAACGCTGAGATGAAAATTGTTGATCCCGAGAATGATTCTTCTTTGCCTCGTAATCAACCTGGTGAAATTTGTATCAGAGGAGACCAAATCATGAAAGgtTATCTAAACGACCCAGAAGCAACAGGGAGAACAATAGACAAAGAAGGTTGGTTGCACACTGGTGACATTGGTTACATTGACAATGATGATGAATTGTTCATAGTTGATAGACTTAAAGAATTGATTAAATACAAAGGTTTTCAAGTTGCTCCAGCTGAACTTGAAGCCATTATTCTTTCACATCCAAATATCTCTGATGTTGCTGTCGTCCCaATGCTAGATGAAGCTGCTGGTGAGGTCCCAGTTGCATTTGTTGTGAGATCAAATGGAAGTATTGACACAAGTGAGGATGAAATTAAGAAGTTTGTCTCGAAACAGGTGGTGTTTTACAAAAGAATAAACAGAGTATTCTTCATTGATGCCATTCCAAAGTCACCCTCAGGCAAAATATTAAGAAAGGACCTAAGGGCTAAGCTTGCAGCTGCTgttccaaattaa 1626 0.3948 MTIQKMEEIIFKSKLPDIYIPKHLPLHSYCFENLSEYGSRPCLIDAPTGEIYTYYDVELASRRVASGLNKLGIGQGDVIMVLLPNCPEFVFSFLGASFRGAVMTAANPFFTSAEIAKQAKASNAKLLVTQGCYFDKVKDLENVKLVFVDSSPEGENHMHFRELAQADENEIEEVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYYHSEDVILCVLPMFHIYSLNSVLLCGLRAKASILLMPKFDIHAFFSLVHKYRVTIVPVVPPIVLAISKSPELDNYDLSSIRVLKSGGAPLGKELEDTVRAKFPKAKLGQGYGMTEAGPVLSMCLSFAKEAIDVKAGACGTVVRNAEMKIVDPENDSSLPRNQPGEICIRGDQIMKGYLNDPEATGRTIDKEGWLHTGDIGYIDNDDELFIVDRLKELIKYKGFQVAPAELEAIILSHPNISDVAVVPMLDEAAGEVPVAFVVRSNGSIDTSEDEIKKFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAAVPN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03833 541 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 5 536 - -
Tsu06g03833 541 Gene3D - 4 434 IPR042099 -
Tsu06g03833 541 Pfam AMP-binding enzyme 33 440 IPR000873 -
Tsu06g03833 541 SUPERFAMILY Acetyl-CoA synthetase-like 13 537 - -
Tsu06g03833 541 Pfam AMP-binding enzyme C-terminal domain 449 525 IPR025110 -
Tsu06g03833 541 ProSitePatterns Putative AMP-binding domain signature. 184 195 IPR020845 -
Tsu06g03833 541 Gene3D - 435 538 IPR045851 -
Tsu06g03833 541 CDD 4CL 20 531 - -
Tsu06g03833 541 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03833 Tsu-Chr6 50474348 50477732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03833 8 503 Monolignol Biosynthesis Gene Families AT1G51680 70.495 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03833 K01904 - gmx:547944 853.973