Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03826 ATGAATGTTGATGACAACACTATATTCTTGTACAACAACTTTAATTTTGTGTCCACTGATGTATTAAACACAGTGCTATGTCAATTGGGAGATTGTGCGAGACAACTGGTTGCACTCAATGCGGAAAGATGTGGAATATGGGAGATGAATGTGTTGCTTCATGTTACCTCGTACATGGTTGAGGAATATCATTTTGATCAATACCTCAATAGTAATAATCAACAAATTGTGGATTTGTTAGAGAAATTAAATGTTGGTCCTTCTTCTTTAGATTTCATCGATCAATGTTCAATTTGTTTGGAGGAGTATTGCGAGGGATCACAGTCGGAACTCTTTTATACGAAATATTCTCATATTTTCCATAAAGAGTGTATTGGCAAGTGGTTTCATCGATGCAGAGATTGTTCATCTTCTTATACATGTCCATTGTGTCGGCGTGAGATAATATGA 450 0.3578 MNVDDNTIFLYNNFNFVSTDVLNTVLCQLGDCARQLVALNAERCGIWEMNVLLHVTSYMVEEYHFDQYLNSNNQQIVDLLEKLNVGPSSLDFIDQCSICLEEYCEGSQSELFYTKYSHIFHKECIGKWFHRCRDCSSSYTCPLCRREII 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03826 149 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 149 - -
Tsu06g03826 149 ProSiteProfiles Zinc finger RING-type profile. 96 145 IPR001841 -
Tsu06g03826 149 SUPERFAMILY RING/U-box 95 148 - -
Tsu06g03826 149 Pfam Ring finger domain 94 145 IPR001841 -
Tsu06g03826 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 149 IPR013083 -
Tsu06g03826 149 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 26 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03826 Tsu-Chr6 50422699 50423148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03826 91 149 C3H Transcription Factor Family AT4G23450 42.373 1.48e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03826 K16271 - mtr:MTR_5g006240 128.257