Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03816 ATGGGTTCTGTATCTGCAGAGGACAAGATGACCATGGATACTGATTTCGATGAGGAGACACCTTTCAGTTCTACTtcaccttcatcttcttcttctgctCCATCTAAACAACTACCACACACTTTTCATTTCGATTCTTCTCCAGTTACTTCTTCTTTGCctaaatcttcttcttcttcttcttctttcttcaatCATTCTCGAACAAGACGAATCAGTAGGAGTATATATATTGTCTTAATCAAAGCTAAGGTCAACATCTTGCTACCATTTGGCCCCTTGGCTATCTTCCTACATTATTTCACCGGTAAACATGTTTGGGTCTTCTTCTTTGCTTTATTGGGTATTGCTCCTTTGGCTGAACGCCTTGGTTATGCTACCGAACAGCTTGCGTTTTACACGGGACCGACAGTTGGGGGTTTGCTTAATGCCACATTTGGAAATGCAACTGAAATGATTATATCTATTTACGCGTTGAAAAGCGATATGATTAGAGTCGTTCAACAATCTTTACTTGGTTCAATCTTGTCAAATATGCTTCTAGTTCTTGGATGTGCATTCTTTACTGGTGGGATTGTCCACTACAAAAAAGTTCAGGTTTTTAATAAGGCAGCTGCTGTTGTCAATTCGGGGTTGCTATTGATGGCTGTAATGGGAATACTATTTCCGGCTGTGCTTCACTTTACTCACTCAGAGGTTCATCTTGGGAAGTCGGTTTTATCCCTATCCAGATTTAGCAGCTGCATAATGCTGGTGGCCTATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAACAAAATTTTTATAGTGCAGTTGACGAGGAAGTAGATACATGTGAAAACTCTGACGAGGAGGAAGAACTTGAGTTAACTAAATGGGAAGCAATAATCTGGCTTGCTATTTTGACAGTATGGGTATCGGTATTGTCTGGATACCTCGTGGATGCCATAGAGGGTGCATCTGAATCATTGAATATGTCAGTGGCTTTTATTAGTGTCATCTTGCTTCCAATAGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCGTTAAGGACAAGCTAGATATCACAATTGGAGTTGCTGTTGGATCATCAACCCAAATATCGATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGATATGGACTTGAATTTTCAACTCTTTGAGACTGCCACACTTTTTATCACTGTGCTGGTAGTTGCATTTATGATGCAGGAAGGGACGTCAAACTATTTTAAAGGCTTGATGCTTATTTTATGCTATCTTATAGTTGCTGCCAGTTTTTTTGTACATGTAGACCCTAAAAGTGGTGACGACTAA 1347 0.3868 MGSVSAEDKMTMDTDFDEETPFSSTSPSSSSSAPSKQLPHTFHFDSSPVTSSLPKSSSSSSSFFNHSRTRRISRSIYIVLIKAKVNILLPFGPLAIFLHYFTGKHVWVFFFALLGIAPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSDMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHYKKVQVFNKAAAVVNSGLLLMAVMGILFPAVLHFTHSEVHLGKSVLSLSRFSSCIMLVAYASYLFFQLRSQQNFYSAVDEEVDTCENSDEEEELELTKWEAIIWLAILTVWVSVLSGYLVDAIEGASESLNMSVAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAVGSSTQISMFVIPFCVVVGWCMGKDMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSGDD 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03816 448 PANTHER VACUOLAR CATION/PROTON EXCHANGER 11 445 - -
Tsu06g03816 448 TIGRFAM caca2: calcium/proton exchanger 79 438 - -
Tsu06g03816 448 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 11 445 IPR004713 GO:0006812|GO:0008324|GO:0016021
Tsu06g03816 448 MobiDBLite consensus disorder prediction 1 64 - -
Tsu06g03816 448 MobiDBLite consensus disorder prediction 17 64 - -
Tsu06g03816 448 Pfam Sodium/calcium exchanger protein 105 262 IPR004837 GO:0016021|GO:0055085
Tsu06g03816 448 Pfam Sodium/calcium exchanger protein 296 435 IPR004837 GO:0016021|GO:0055085
Tsu06g03816 448 TIGRFAM cax: calcium/proton exchanger 88 438 IPR004798 GO:0006816|GO:0015369
Tsu06g03816 448 Gene3D - 136 276 IPR044880 -
Tsu06g03816 448 Gene3D - 282 439 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03816 Tsu-Chr6 50339333 50345102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03816 51 443 Antiporters AT3G13320 72.544 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03816 K07300 - gmx:100806000 673.315