Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03814 atggcAGCAACATCCACCGAAGAAATAATATTCAGGTCTAAACTTCCAGACATATACATCCCAAAACACCTTCCACTCCATTCTTATTGCTTTGAAAATCTCTCCCAATTTGGTACACGTCCATGTCTCATCAATGCACCCACCGGAAAAGTCTACACCTACCACGATGTCGAACTCACCTCTCGTAAAGTTGCCTCCGGTCTCAACAAATTGGGAGTCCAACAGGGGGATGTCATCATGATCCTCCTCCCCAATTCCCCTGAATTCGTCTTCTCCTTTCTTGCCGCTTCTTATCTCGGCGCCATAGCCACCGCAGCCAATCCTTTCTTTATGGCTGCAGAGATTGGAAAGCAAGCAAAAGCCTCCAAAGCCAAGTTGATCATAACACAGGCATGTTACTACGACAAAGTTAAAGAGTTGTTGTTGGACAACCACGGTGCTGCTGCTGATCATGtcaataagaagaagaaaaagttgGTACTGATAGACTCTCTCCCACCCTCTACAACAacagaagaagatgatgataatcGTGTTCATTTCTCAACACTGATCGATGCTGACGAGAAGGAATTGCCAGATGTGAAGATCCACCCTGATGATGTGGTGGCGCTGCCGTATTCATCAGGGACAACCGGTTTACCAAAAGGGGTGATGTTAACACACAAGGGATTAGTGACTAGCATAGGGCAGCAGGTGGatggagagaatccaaatctaTATTACAGCAATGAAGATGTGATACTGTGTGTGCTTCCTCTGTTTCACATTTACTCATTAAACTCTGTTTTGCTATGTGGATTAAGAGCCAAGGCAACTATTCTTTTAATGCCAAAATTCGACATAAATGGTTTCTTGAGTCTAGTGAACAAACATGGAGTAACAGTTGCACCGGTAGTACCTCCGATAGTGTTGGCGATTGCAAAGTCACCGGATCTAAACAAATATGATCTGTCTTCAATAAGAATATTGAAATCAGGAGGTGCTCCACTTGGAAAAGAACTTGAAGACACTGTTAGGACCAAATTTCCCAAAGCAATACTTGGACAGGGATACGGAATGACTGAGGCAGGGCCAGTGTTAACAATGAGCTTAGCATTTGCTAAAGAAGCAGTGAATGTGAAACCAGGTGCGTGTGGAACAGTTGTAAGAAATGCAGAGATGAAAATTGTGGATCCTGAAACTGGTAATTCTTTACCTAGAAACCAATCCGGTGAAATCTGCATAAGAGGAGATCAGATCATGAAAGGTTATCTAAATGATGTGGAGGCAACAGAGAGAACCATAGACAAACAAGGTTGGTTGCATACAGGTGATATTGGGTATGTTGACGATGAGGATGAATTATTCATTGTTGATAGATTGAAGGAATTGATCAAATACAAAGGATTTCAAGTTGCTCCAGCTGAACTTGAAgctcttcttctttctcatcCCAAAATCTCTGATGCTGCTGTTGTCCCAATGAAGGATGAAGCTGCTGGAGAGGTACCTGTTGCATTTGTGGTGAGATCAAATGGTCACACTGACTTAACTGAGGATGAAATTAAGCAATTTATCTCCAAACAGGTGGTGTTTTACAAAAGAATAAATCGAGTATTCTTCATTGATGCAATTCCCAAGTCACCGTCAGGAAAAATCTTGCGTAAGGATCTCAGAGCAAAGTTAGCAGCACAAGTTGTTCCAAATTGA 1692 0.4043 MAATSTEEIIFRSKLPDIYIPKHLPLHSYCFENLSQFGTRPCLINAPTGKVYTYHDVELTSRKVASGLNKLGVQQGDVIMILLPNSPEFVFSFLAASYLGAIATAANPFFMAAEIGKQAKASKAKLIITQACYYDKVKELLLDNHGAAADHVNKKKKKLVLIDSLPPSTTTEEDDDNRVHFSTLIDADEKELPDVKIHPDDVVALPYSSGTTGLPKGVMLTHKGLVTSIGQQVDGENPNLYYSNEDVILCVLPLFHIYSLNSVLLCGLRAKATILLMPKFDINGFLSLVNKHGVTVAPVVPPIVLAIAKSPDLNKYDLSSIRILKSGGAPLGKELEDTVRTKFPKAILGQGYGMTEAGPVLTMSLAFAKEAVNVKPGACGTVVRNAEMKIVDPETGNSLPRNQSGEICIRGDQIMKGYLNDVEATERTIDKQGWLHTGDIGYVDDEDELFIVDRLKELIKYKGFQVAPAELEALLLSHPKISDAAVVPMKDEAAGEVPVAFVVRSNGHTDLTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAQVVPN 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03814 563 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 557 - -
Tsu06g03814 563 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 5 557 - -
Tsu06g03814 563 Pfam AMP-binding enzyme 33 461 IPR000873 -
Tsu06g03814 563 ProSitePatterns Putative AMP-binding domain signature. 205 216 IPR020845 -
Tsu06g03814 563 Gene3D - 4 455 IPR042099 -
Tsu06g03814 563 Pfam AMP-binding enzyme C-terminal domain 470 546 IPR025110 -
Tsu06g03814 563 SUPERFAMILY Acetyl-CoA synthetase-like 14 559 - -
Tsu06g03814 563 CDD 4CL 20 552 - -
Tsu06g03814 563 Gene3D - 456 560 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03814 Tsu-Chr6 50328178 50331136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03814 5 524 Monolignol Biosynthesis Gene Families AT1G51680 67.885 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03814 K01904 - gmx:547944 868.226