Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03803 ATGAGGCCTATTCTGATGAAAGGCCACGAAAGGCCATTAACTTTCCTTAAGTACAACAGGGATGGTGATCTTCTATTTTCTTGCGCCAAAGACCACAACCCCACCGTGTGGTTTGCTGACAACGGCGAACGCTTAGGAACTTATCGAGGCCATAATGGTGCTGTTTGGTGCTGTGATGTCACAAGAGATTCGGGTCGACTCATTACCGGCAGCGCTGACCAGACGGCGAAGCTGTGGAATGTACAAACTGGTCAACAGTTGTTCACCTTCAATTTTGATTCCCCCACAAGGTCTGTTGACTTTTCTGTCGGTGATAAGCTTGCAGTCATCACCACCGACCCCTTTATGGAACTTTCTTCAGCAATCCATGTCAAACGCATTGCTAAAGATCCTGCAGACCAAACTGGGGAATCTTTGCTTGTCATTAAGGGCCCACAGGGTAGAATCAATAGAGCCATTTGGGGACCCCTCAATGAAACCATTATCAGTGGTGGAGAAGACTCTGTCATTCGAATTTGGGATTCTGAGGCATTCCTTCTttcctatatttatttatgttgcaACACTCACTATCATGAGGCACGATTATTTCATTCTGTTTCACTTGCTTTGCAGACCGGAAAACTACTTAAGGAATCAGACAAGGAATCTGGCCACAAAAAGACAATAACATCACTTGTTAAATCTGCTGATGGATCACATTTCCTAACCGGCTCCCTTGATAAGTCTGCTAAGATTTGGGATAGCAGAACATTGACTATTGTCAAGACATATGTGACCGAGCGCCCTGTCAATGCAGTTGCAATGTCCCCCCTTCTTGATCATGTGGTTCTTGGAGGTGGTCAGGAGGCATCAGCTGTTACAACTACTGATCATCGTGCTGGAAAATTTGAAGCCAAGTTCTATCATAagattttaCAAGAAGAAATTGGGGGTGTGAAAGGACATTTTGGACCGATTAATGCACTGGCCTTTAACCCTGATGGAAAAAGttttACAAGTGGAGGTGAAGATGGATATGTACGTTTGCACCATTTTGACCCAGAttattttaatatcaaaatttag 1068 0.4288 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVTRDSGRLITGSADQTAKLWNVQTGQQLFTFNFDSPTRSVDFSVGDKLAVITTDPFMELSSAIHVKRIAKDPADQTGESLLVIKGPQGRINRAIWGPLNETIISGGEDSVIRIWDSEAFLLSYIYLCCNTHYHEARLFHSVSLALQTGKLLKESDKESGHKKTITSLVKSADGSHFLTGSLDKSAKIWDSRTLTIVKTYVTERPVNAVAMSPLLDHVVLGGGQEASAVTTTDHRAGKFEAKFYHKILQEEIGGVKGHFGPINALAFNPDGKSFTSGGEDGYVRLHHFDPDYFNIKI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03803 355 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
Tsu06g03803 355 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Tsu06g03803 355 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 205 355 - -
Tsu06g03803 355 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 177 - -
Tsu06g03803 355 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 205 355 - -
Tsu06g03803 355 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 177 - -
Tsu06g03803 355 SUPERFAMILY WD40 repeat-like 4 343 IPR036322 GO:0005515
Tsu06g03803 355 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Tsu06g03803 355 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Tsu06g03803 355 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Tsu06g03803 355 PRINTS G protein beta WD-40 repeat signature 235 249 IPR020472 -
Tsu06g03803 355 SMART WD40_4 1 38 IPR001680 GO:0005515
Tsu06g03803 355 SMART WD40_4 206 248 IPR001680 GO:0005515
Tsu06g03803 355 SMART WD40_4 306 345 IPR001680 GO:0005515
Tsu06g03803 355 SMART WD40_4 135 174 IPR001680 GO:0005515
Tsu06g03803 355 SMART WD40_4 41 80 IPR001680 GO:0005515
Tsu06g03803 355 Gene3D - 1 355 IPR015943 GO:0005515
Tsu06g03803 355 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 216 251 - -
Tsu06g03803 355 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 174 IPR001680 GO:0005515
Tsu06g03803 355 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 343 IPR001680 GO:0005515
Tsu06g03803 355 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 355 IPR027525 GO:0003743|GO:0005737|GO:0005852
Tsu06g03803 355 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 257 IPR001680 GO:0005515
Tsu06g03803 355 CDD WD40 7 343 - -
Tsu06g03803 355 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Tsu06g03803 355 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 343 - -
Tsu06g03803 355 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 174 - -
Tsu06g03803 355 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Tsu06g03803 355 Pfam WD domain, G-beta repeat 217 248 IPR001680 GO:0005515
Tsu06g03803 355 Pfam WD domain, G-beta repeat 312 343 IPR001680 GO:0005515
Tsu06g03803 355 Pfam WD domain, G-beta repeat 140 174 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03803 Tsu-Chr6 50232084 50236963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03803 1 355 Eukaryotic Initiation Factors Gene Family AT2G46290 73.950 0.0 547