Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03801 ATGGCCTCTAGCTACTCAAGTTCTCCATGTGCTGCTTGCAAGTTTCTAAGAAGAAAATGCAATCAAGATTGcatttttgcaccttattttcCACCGGAAGAACCTCAAAAATTTGTTAATGTTCACAAAATATTTGGTGCAAGCAATGTTAGCAAATTTCTAAATGAAGTTTTACCTCATCAAAGGGAAGATACAGTGAATTCTCTAGCTTATGAAGCTGAAGCAAGGATTAAAGATCCAGTTTATGGTTGTGTTGGAGCTATTTCAGTGCtacaaaaacaacttattaGGCTTCAAAAGGAACTTGATGCTACAAATGCTGATTTGATTAGGATTACTCATCAAGGTTCAATTTCTCTTGGCCTTGAACATGTTGATCACTCTCATGGTTTTCCTAATTATCCTTCTAATTAA 414 0.3309 MASSYSSSPCAACKFLRRKCNQDCIFAPYFPPEEPQKFVNVHKIFGASNVSKFLNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGAISVLQKQLIRLQKELDATNADLIRITHQGSISLGLEHVDHSHGFPNYPSN 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03801 137 Coils Coil 88 108 - -
Tsu06g03801 137 Pfam Lateral organ boundaries (LOB) domain 9 105 IPR004883 -
Tsu06g03801 137 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 2 115 - -
Tsu06g03801 137 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Tsu06g03801 137 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03801 Tsu-Chr6 50223104 50223517 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03801 3 111 AS2 family AT3G27650 80.734 2.63e-66 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu06g03801 LOB 8.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03801 - - gmx:100788656 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03801 06 50223104 50223517 Tsu06g03801 06 50223104 50223517 ECH