Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03799 ATGACATCTAGCTACTCAAATTCTCCATGTGCTGCTTGCAAGTTTCTAAGAAGAAAATGTAATCAAGATTGcatttttgcaccttattttcCACCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAAATATTTGGTGCAAGTAATGTTAGTAAAATTCTAAATGAAGTATTACCTCATCAAAGGGAAGATACAGTGAATTCTTTAGCTTATGAAGCTGAAGCACGGATTAAAGATCCAGTTTATGGTTGTGTTGGATTTATTTCAGGGCTACAAAGACAACTCCTTGGTCTTCAAAAGGAACTTGATGCTACAAATGCTGATTTGATTCAATTTACTATTCAAGGTTCTTCTTCCCTTTGTCATGGACATGTTGATTACTCTCATGGTTTTTATAATTACCCTTCTAATTTTGAGCAATGA 423 0.331 MTSSYSNSPCAACKFLRRKCNQDCIFAPYFPPEEPQKFANVHKIFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGFISGLQRQLLGLQKELDATNADLIQFTIQGSSSLCHGHVDYSHGFYNYPSNFEQ 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03799 140 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 116 - -
Tsu06g03799 140 Coils Coil 88 108 - -
Tsu06g03799 140 Pfam Lateral organ boundaries (LOB) domain 9 105 IPR004883 -
Tsu06g03799 140 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 2 116 - -
Tsu06g03799 140 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03799 Tsu-Chr6 50198293 50198715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03799 3 123 AS2 family AT3G27650 73.984 5.60e-66 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu06g03799 LOB 1.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03799 - - gmx:100788656 209.92