Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03796 ATGTCTGGCTTAGAGGAATTGAGAAAAAAGCTTGCACCATTGTTTGATGCTGAGAAGGGTTTCTCATCAACTTCAACTTTAGACCCAAATGATTCTTATACGTTTTCAGATGGTGGAACAGTGAATTTGTTGAGTAGATCGTACGGTgtttacaatatcaatgaacTAGGGTTACAGAAGTGCACCACATCATCATCAAGATTGAATGAAAGTAGCGACGATGGTGAAAAGAATTATAGATGTGGTTCTCATGAGATGAGAATTTTTGGAGCAATTGGTAGTGGTGCTAGTAGTGTTGTTCAAAGAGCTATGCATATACCAACACATAGAGTTCTTGCATTAAAGAAGATCAATATCTTTGAGAAGGAGAAAAGGCAGCAGCTACTTACTGAGATAAGGACGTTATGTGAAGCACCTTGTAACGAGGGTCTTGTGGAATTTCACGGTGCATTTTACACTCCAGACTCAGGACAGATAAGCATAGCTTTAGAGTACATGGATGGAGGATCACTGGCAGATATTTTGCGAACGCATAGAATGATACCCGAACCTATTTTATCATCCATGTTTCAGAAGCTCTTACATGGTCTAAGCTATCTTCATGGAGTCAGATATTTAGTTCACAGAGACATAAAGCCTGCTAATTTACTTGTAAATCTCAAGGGGGAGCCGAAAATTACCGATTTTGGTATCAGTGCTGGCTTAGAGAACTCGGTTGCAATGTGTGCTACATTCGTTGGAACTGTTACGTACATGTCACCCGAGCGAATTCGAAATGAAAGCTATTCTTATCCGGCTGATATTTGGAGCCTCGGTCTTGCGCTTCTCGAGTGTGGTACAGGAGTATTCCCATACACAGCTAATGAAGGTCCTGTCAATCTTATGTTACAGATCCTTGATGATCCATCACCATCTCCATCAAAAGAGAAGTTTTCACCTGAATTCTGCTCCTTTGTCGATGCATGCTTACTGAAGGATCCAGATAACAGACCAACGGCCGAACAGCTTCTTTCGCACCCTTTCATTACAAAATATGAGACTGCCAAGGTAGATTTAGCGGGATTTGTTCGCAATGTTTTTGATCCTACGAAAAGAATGAAGGACTTGGCAGATATGTTGACAATACATTATTACTTACTAATTGATGGACCTGATAATTTGTGGCAACATACAAAGAACTTATATAACGAAAACTCGATTTTCAGCTTCTCGGGGAAACAACATGTTGGTCCTAACAATATATTCACTACTCTATCAAGTATTCGAACTACATTAATTGGTGACTGGCCACCAGAAAAGTTGGTACATGTAGTTGAGAAGCTTCAATGCCGAGCACACGGTGAAGATGGAGTTGCAATAAGAGTCTCAGGATCATTCATAGTTGGTAATCAGTTTCTCATATGTGGAGATGGCATTCAAGTAGAGGGATTACCAAACTTTAAGGATCTTGGAATTGATATTTCTAGTAAGAGAATGGGTATATTTCATGAACAATTCATAGTGGAACCAACTAGTAATATTGGATGTTACACTATAGTTAAACAAGAATTGTACATTAACAAATAA 1566 0.3883 MSGLEELRKKLAPLFDAEKGFSSTSTLDPNDSYTFSDGGTVNLLSRSYGVYNINELGLQKCTTSSSRLNESSDDGEKNYRCGSHEMRIFGAIGSGASSVVQRAMHIPTHRVLALKKINIFEKEKRQQLLTEIRTLCEAPCNEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRTHRMIPEPILSSMFQKLLHGLSYLHGVRYLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALLECGTGVFPYTANEGPVNLMLQILDDPSPSPSKEKFSPEFCSFVDACLLKDPDNRPTAEQLLSHPFITKYETAKVDLAGFVRNVFDPTKRMKDLADMLTIHYYLLIDGPDNLWQHTKNLYNENSIFSFSGKQHVGPNNIFTTLSSIRTTLIGDWPPEKLVHVVEKLQCRAHGEDGVAIRVSGSFIVGNQFLICGDGIQVEGLPNFKDLGIDISSKRMGIFHEQFIVEPTSNIGCYTIVKQELYINK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03796 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Tsu06g03796 521 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Tsu06g03796 521 Gene3D Phosphorylase Kinase; domain 1 54 167 - -
Tsu06g03796 521 CDD PKc_MAPKK_plant_like 87 346 - -
Tsu06g03796 521 SUPERFAMILY NTF2-like 367 464 IPR032710 -
Tsu06g03796 521 ProSiteProfiles Nuclear transport factor 2 domain profile. 369 519 IPR018222 -
Tsu06g03796 521 ProSiteProfiles Protein kinase domain profile. 86 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03796 521 Gene3D Transferase(Phosphotransferase) domain 1 168 367 - -
Tsu06g03796 521 Pfam Protein kinase domain 90 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03796 521 Gene3D - 368 519 - -
Tsu06g03796 521 SUPERFAMILY Protein kinase-like (PK-like) 88 361 IPR011009 -
Tsu06g03796 521 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 2 520 - -
Tsu06g03796 521 SMART serkin_6 86 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03796 521 PANTHER - 2 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03796 Tsu-Chr6 50170907 50175500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03796 35 520 MAP Kinase Kinase Gene Family AT5G40440 77.366 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Tsu06g03796 Pkinase 4.8e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03796 K20607 - gmx:100784935 953.355