Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03795 ATGGCCACTCCAAATTCCAAATCGATCTTCAACATCGTAACTTCACGAGAGCTTAATTCCTTTCACGTTCGTAAACGACCTCACATGGATGGTTGGGTTCATGGTGTTTTCGAGATGGGAGCTTTAGCCACACAGCACAATGGTGAAAATATTGTTCCTCTTGCTCTCTCTTTTGCTAAGACATCGAAATTTTCGCACATTCTTGCTTTATCAAATGAGGAAGGATATGTTAGTTTGTTTGATACTCGCCGTAAATTCTTACAGCCCTTGTGCTACGAAGAAAATGCAGATAATGCAAGGATTTGTGAATGGAGTGCACATAATAACGCTGTTTTTGATGTCAATTGGATTAAGGATGATACACAGATCCTTACTGCTTCTGGTGATCAAACGGTGAAGATATGGGATGTTCAAGAAAAGAAGTGTCTTGGAGTGTTAACAGGACACACGGGAAGTGTGAAATCTTTTTGTTCTCATCCAACTAATTCTGATATTATCGTCTCTTGTTCAAGAGATGGATCCTTTCGGCTTTGGGATTTAAGATGTAACTCCAATTCTAAGAATAGGCATGGAGAAGTTAGCATATGTTCAACGGCTGTTGTAAAGGGAGCACAtctttcatatcaaatataCCCAGTAAGGGGGCGCAAGGCCAGGGGTGCTTCCATGAGTATTACATCTGCCCTTTGGCTCAAGGATGAAGTTTCCATAGCCACTGCCGGGGCAGCAGATAGTGTGCTGAAGTTTTGGGATACCAGAAATTTAAAAAGTATTGTCACGCAAACATGTCCTCAACCTGAGTCAACAGGAAAGCAAAGATTACATGGTATATCTAGCTTGTCCCAAGATGACAGTGGACTTTTGCTTTCAGCTTCCTGCATGGATAGCCGAGTTTATCTATATAATACACTTCAACTTGAAAAGGGTCCTTTAAGACATTTTGAAGGAGGCCGTATAGATTCATTTTTTGTGAAGGCCGCAATTAGCCCCGATGCATCTAGCATAGTGTGCGGTTCTAGTACGGGAAAAGCATATGTTTGGCAGGTTGACAAGCCTCAAGTGCCACCTACTATTTTGAAGAGCCACGAGGATGATGAGGAAGTTACTGCAGTTGACTGGTGCCGCTCTGATATCGGAAAACTAGCAACTGCGTCTGATGATTTCACAatcCGGATATGGAATCAACGCAGTTATGTTAGCACAACAAAGTATCCATTTTCCATTCGAAGAAGAGTTATGGCCATCCCTAGAACAGAGTGCAAAATGCTATTAAACAATGAAGAAATTTGCCCCAAGTCAGGTCTCGATGGTCACGAAACACCGCACCACCCAATGAAGTCAGCCAATCCAATCACACCACCTAAAATGACTACATCTGAAGGCCAAAAGAACCAGCTTTCATCAGAATTTGATCTATCCATATCTCCTAAAAACACTCCAGAGTCTGCTATGAAGAGTCCTTCATCTGTATTGAACCCACCACCCTCCCTAAAAAGAACTATCCGCGACTACTTTGTAGCATCTTAA 1527 0.4178 MATPNSKSIFNIVTSRELNSFHVRKRPHMDGWVHGVFEMGALATQHNGENIVPLALSFAKTSKFSHILALSNEEGYVSLFDTRRKFLQPLCYEENADNARICEWSAHNNAVFDVNWIKDDTQILTASGDQTVKIWDVQEKKCLGVLTGHTGSVKSFCSHPTNSDIIVSCSRDGSFRLWDLRCNSNSKNRHGEVSICSTAVVKGAHLSYQIYPVRGRKARGASMSITSALWLKDEVSIATAGAADSVLKFWDTRNLKSIVTQTCPQPESTGKQRLHGISSLSQDDSGLLLSASCMDSRVYLYNTLQLEKGPLRHFEGGRIDSFFVKAAISPDASSIVCGSSTGKAYVWQVDKPQVPPTILKSHEDDEEVTAVDWCRSDIGKLATASDDFTIRIWNQRSYVSTTKYPFSIRRRVMAIPRTECKMLLNNEEICPKSGLDGHETPHHPMKSANPITPPKMTTSEGQKNQLSSEFDLSISPKNTPESAMKSPSSVLNPPPSLKRTIRDYFVAS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03795 508 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Tsu06g03795 508 SMART WD40_4 211 251 IPR001680 GO:0005515
Tsu06g03795 508 SMART WD40_4 97 136 IPR001680 GO:0005515
Tsu06g03795 508 SMART WD40_4 267 302 IPR001680 GO:0005515
Tsu06g03795 508 SMART WD40_4 139 179 IPR001680 GO:0005515
Tsu06g03795 508 SMART WD40_4 352 394 IPR001680 GO:0005515
Tsu06g03795 508 SMART WD40_4 307 348 IPR001680 GO:0005515
Tsu06g03795 508 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Tsu06g03795 508 SUPERFAMILY WD40 repeat-like 62 405 IPR036322 GO:0005515
Tsu06g03795 508 MobiDBLite consensus disorder prediction 451 495 - -
Tsu06g03795 508 Gene3D - 212 413 IPR015943 GO:0005515
Tsu06g03795 508 MobiDBLite consensus disorder prediction 433 508 - -
Tsu06g03795 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Tsu06g03795 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 188 IPR001680 GO:0005515
Tsu06g03795 508 Pfam WD domain, G-beta repeat 357 394 IPR001680 GO:0005515
Tsu06g03795 508 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Tsu06g03795 508 Pfam WD domain, G-beta repeat 103 136 IPR001680 GO:0005515
Tsu06g03795 508 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Tsu06g03795 508 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 3 506 - -
Tsu06g03795 508 Gene3D - 39 190 IPR015943 GO:0005515
Tsu06g03795 508 PANTHER BNAA06G31940D PROTEIN 3 506 - -
Tsu06g03795 508 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Tsu06g03795 508 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Tsu06g03795 508 PRINTS G protein beta WD-40 repeat signature 381 395 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03795 Tsu-Chr6 50164683 50168307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03795 105 307 U-box Gene Family AT2G33340 25.339 7.54e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03795 K11790 - gmx:100819114 672.93