Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03775 ATGGCTGCTACAGCAACTGCTTCAGTGGGTCCCCGGTATGCGCCACCTGATCCTACACTTCCTAAACCATGGAAGGGTCTTGTGGATGGCAAGACTGGCTATCTTTACTTTTGGAATCCTGAGACTAATGTCACTCAGTATGAGAGGCCTTCGAGCTCAGCTGCCCCACCAAAGTCTTCTTCAGTCCCTAACTCTTCTGTCCAGGTTCAGCAATCATCTCAAGGACGTGGTCGTAGTCGTAGTCCTGATTTCAGTGATAGGTATGATAGGAATGGAAATGGTGGGTCAAATGAAGGTGGATCCCGTAACCATCAGAGTTCCAAAGGTGGCAGTTTTAGCGCTAATGATAATGTTGCAAATGGAACACATGTTGCTGGGAATGTGAGTTCTATCAAAGCTCATGTGGCACCAGATACAGGACCTGCACTATCTCCAGATGCTTATAGACGTCGTCATGAGATCACTGTTACTGGAGATAATGTTCCTGCACCTGTTACATCATTTGCGTCCTCTGGCTTTCCATCTGAGATTCTTAGAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAATCATGGCCCATTGCCCTTCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGAAAAACCTTGGGGTATTTGCTTCCAGCATTTATTCATCTCAAGCGTACTAATAATAACGCCAAAATGGGCCCCACTGTATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATTCAAGATGAAGCAGTGAAGTTTAGTAAAACATCAAGAATTGCCTGCACCTGCTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGAGATATTGACCGTGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCCTGAATGATATTCTTGAGATGAGGAGAATCACTCTTCATCAGGTCTCTTACCTAGTGCTAGATGAGGCAGACCGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAATGAGGTGCCTGCTCGCAGGCAAACTCTCATGTTCACTGCAACATGGCCTAAGGAGGTTAGGAGAATTGCAGCTGATCTGCTGGTCAATCCTGTCCAAGTGAACATTGGCAATGTTGACGAGCTTGTTGCTAACAAGTCCATCACTCAGCATATTGAAGTTTTGGCACATATGGAGAAACAGAGACGACTGGAAAGTATTTTGCGGTCACAGGATCAAGGATcaaagataattattttttgttctacCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACACGCCAGTTTGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGATAGGGATCATGTGTTGAATCAGTTTCGAAGTGGAAGGACTCCTGTACTTGTAGCCACAGATGTTGCAGCTCGTGGACTGGATGTGAAAGACATTAGAGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAGGATTATGTTCATAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGTATAGCTTACACTTTCTTTGGGGACCAGGATGCTAAACATGCTTCAGATCTCATCAAAATCTTAGAGGGTGCTAACCAGAAAGTCCCTGCAGAACTTCGTGAGTTGTCATCCAGGGGTGGGGGTGGGTTTAGCAGATCCAAATATCGTTCTGGTGGTCGTGGTGATTCTGGATTCGGTGCAAAGAGTTATGACTCTGGGTATGGTGGAAGGGGTAATGATTCAAATTATGGAGGAAGGGGTGGATATGGGTCTTCTGCTGCTTTTGGAAGAGGTGGAGGCCGTGGATTTGACTATGACTCACAGAGGAATGAAAGAGATCGAAGCCCTGACAGAGGATCTAGCTGGAGTGATCGCTTCAAAACTGTCAATCGCGAACGCAGCCGCAGTCCTGCCAAGGCTGCACCATCTCAAAATGCCCCGGTCAGCTTTCACCAAGCAATGATGCAACGTAGTGGAGGAGGTGGTGATCGCAACAAGAGCTTTAACCGGGAGCGAAGCCGCAGTCCTAGTCCTTATAGACAGGACAGGGCTCCAGCAGGCCGTGAACGATCCCCTTCTTCCCCTGGTGGCGGTAGGTCTAACAACAGTCCAAAGAAAGGGTGGGGTGGGTCTTCAGGTGATGGAAGAAACGGTGGTTCTCATTCATACAATGGAGAATTGGAGGAAGGGATGATTCCTGATGAAGAAGGAATGATTGGTCATGATGATTCTATATATCAAAGTGCAAATTAG 2256 0.4659 MAATATASVGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKSSSVPNSSVQVQQSSQGRGRSRSPDFSDRYDRNGNGGSNEGGSRNHQSSKGGSFSANDNVANGTHVAGNVSSIKAHVAPDTGPALSPDAYRRRHEITVTGDNVPAPVTSFASSGFPSEILREVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTVLVLSPTRELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRITLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMFTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMEKQRRLESILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKILEGANQKVPAELRELSSRGGGGFSRSKYRSGGRGDSGFGAKSYDSGYGGRGNDSNYGGRGGYGSSAAFGRGGGRGFDYDSQRNERDRSPDRGSSWSDRFKTVNRERSRSPAKAAPSQNAPVSFHQAMMQRSGGGGDRNKSFNRERSRSPSPYRQDRAPAGRERSPSSPGGGRSNNSPKKGWGGSSGDGRNGGSHSYNGELEEGMIPDEEGMIGHDDSIYQSAN 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03775 751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 544 IPR001650 -
Tsu06g03775 751 ProSiteProfiles WW/rsp5/WWP domain profile. 18 52 IPR001202 GO:0005515
Tsu06g03775 751 CDD WW 21 49 IPR001202 GO:0005515
Tsu06g03775 751 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 317 325 IPR000629 -
Tsu06g03775 751 MobiDBLite consensus disorder prediction 592 751 - -
Tsu06g03775 751 SMART helicmild6 425 505 IPR001650 -
Tsu06g03775 751 MobiDBLite consensus disorder prediction 638 653 - -
Tsu06g03775 751 Gene3D - 376 546 IPR027417 -
Tsu06g03775 751 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 166 194 IPR014014 GO:0003724
Tsu06g03775 751 MobiDBLite consensus disorder prediction 46 121 - -
Tsu06g03775 751 MobiDBLite consensus disorder prediction 1 26 - -
Tsu06g03775 751 CDD SF2_C_DEAD 385 514 - -
Tsu06g03775 751 Pfam WW domain 20 50 IPR001202 GO:0005515
Tsu06g03775 751 Gene3D - 16 65 - -
Tsu06g03775 751 MobiDBLite consensus disorder prediction 539 577 - -
Tsu06g03775 751 MobiDBLite consensus disorder prediction 665 688 - -
Tsu06g03775 751 MobiDBLite consensus disorder prediction 605 635 - -
Tsu06g03775 751 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 123 627 - -
Tsu06g03775 751 SMART ww_5 19 52 IPR001202 GO:0005515
Tsu06g03775 751 SMART ultradead3 185 388 IPR014001 -
Tsu06g03775 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 521 IPR027417 -
Tsu06g03775 751 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 123 627 - -
Tsu06g03775 751 SUPERFAMILY WW domain 12 51 IPR036020 GO:0005515
Tsu06g03775 751 MobiDBLite consensus disorder prediction 46 79 - -
Tsu06g03775 751 MobiDBLite consensus disorder prediction 90 121 - -
Tsu06g03775 751 ProSitePatterns WW/rsp5/WWP domain signature. 24 50 IPR001202 GO:0005515
Tsu06g03775 751 Gene3D - 144 375 IPR027417 -
Tsu06g03775 751 Pfam DEAD/DEAH box helicase 190 359 IPR011545 GO:0003676|GO:0005524
Tsu06g03775 751 Pfam Helicase conserved C-terminal domain 397 505 IPR001650 -
Tsu06g03775 751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 371 IPR014001 -
Tsu06g03775 751 MobiDBLite consensus disorder prediction 695 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03775 Tsu-Chr6 50014955 50020932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03775 164 543 Eukaryotic Initiation Factors Gene Family AT3G19760 33.420 7.72e-64 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03775 K12823 - gmx:100816455 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03775 06 50014955 50020932 Tsu06g03775 06 50014955 50020932 ECH