Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03772 ATGGACAAAAAACCGTGCAACTCATCTCAAGATCCTGAAGTGAGAAAGGGGCCATGGACCATGGAAGAAGACTTGATTTTGATCAATTATATTGCAAATCATGGTGAAGGTGTTTGGAATTCCTTAGCCAAAGCTGCtgGTCTTAAACGTACAGGAAAGAGTTGCAGACTTCGATGGTTAAACTATCTTCGTCCTGATGTTAGAAGAGGGAATATTACACCTGAGGAACAACTTTTGATCATGGAACTTCATTCGAAGTGGGGAAATAGGTGGTCCAAAATTGCAAAGCATCTTCCGGGAAGAACTGACAATGAGATTAAGAATTTTTGGAGGACAAGGATACAAAAGCACATTAAACAAGTTGATAATCCTCATCAACAAAATTATCAACCACAAATGAGTTTAGAGATAAATGATCATCATCATTCAAGTAGTAGCCAAGTTTCCAACATTGTAGAGCCAATGGAAACTTACTCTCCAACTTCATATCACAACCAAGGAACTTTGGAACCATTTCCAACTCAATTTCCAATAATCAATGatcatcaatcaagttgttgtACAAATGACAACAATAACAACAGTTATTGGAGCATGGAGGACATTTGGTCAATGCAATTACTCAATGGAGATTAA 636 0.3632 MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHSKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQVDNPHQQNYQPQMSLEINDHHHSSSSQVSNIVEPMETYSPTSYHNQGTLEPFPTQFPIINDHQSSCCTNDNNNNSYWSMEDIWSMQLLNGD 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03772 211 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 208 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tsu06g03772 211 CDD SANT 73 112 IPR001005 -
Tsu06g03772 211 Gene3D - 16 68 - -
Tsu06g03772 211 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Tsu06g03772 211 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Tsu06g03772 211 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 208 - -
Tsu06g03772 211 CDD SANT 18 63 IPR001005 -
Tsu06g03772 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Tsu06g03772 211 Gene3D - 73 144 - -
Tsu06g03772 211 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Tsu06g03772 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Tsu06g03772 211 SMART sant 68 116 IPR001005 -
Tsu06g03772 211 SMART sant 15 65 IPR001005 -
Tsu06g03772 211 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Tsu06g03772 211 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03772 Tsu-Chr6 49947229 49951988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03772 4 211 MYB Transcription Factor Family AT3G01530 58.140 9.82e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g03772 Myb_DNA-binding 7.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03772 K09422 - gmx:778048 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03772 06 49947229 49951988 Tsu06g03772 06 49947229 49951988 ECH