Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03748 ATGACAGAATTAGATCCGTCTAAGAAAGTAGCTGATAGGTATCTCAAACGTGAGGTCCTTGGTGAAGGTACCTATGGTGTTGTTTACAAAGCCATTGATACTCAGACAGGACAGACGGTTGCTATTAAGAAGATTCGGATTGGCAAGCAGAAAGAAGGGGTGAATTTTACAGCTCTTAGAGAAATTAAATTGCTTAAAGAACTCAAAGATCCAAATATAATTGAGTTGATTGATTGCTTCCCGCATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATAAGAGATCGAAATATTTTCCTTTCACCTGGTGACATTAAATCTTACCTTCAAATGACGCTAAAAGGTCTTGCTCATTGTCACAAAAAATGGGTATTGCATAGGGATATGAAACCAAATAATTTGTTGATAGGACCCAACGGACAGTTGAAACTTGCCGATTTTGGTTTAGCACGGATATTTGGAAGCCCAGATCGCAGATTCACTCATCAGGTATTTGCGCGGTGGTATAGAGCACCTGAGCTCTTATTTGGCACTAAGCAGTATGGCCCAGGGGTAGATGTTTGGGCTGCAGCCTGTATATTTGCGGAGCTTCTTCTTCGTCGACCCTTTTTGCAGGGCTCAAGTGATATTGACCAATTAGGAAAGATTTTCGCAGCATTTGGAACTCCATCTCCTTCTCGGTGGCCTGATATGTTATACCTTCCTGATTATGTTGAATATCAATACGTGCCTGCCCCTCCTTTGCGTTCTTTATTTCCAATGGCAACTGATGATGCTTTAGACTTGTTGTCTAAGATGTTTACATATGACCCAAAAGAGAGGATTTCAGTGCAGCAGGCATTAGAACACAGATACTTTTCTTGTCCTCCTCCGCCCACAGATCCAGAAAAGCTTCCGAGACCTGCCCCTAAGGGGGAAATTAAGGAATCAGATTTGAATCCACATGAGGCTCCAACTGTCTTATCACCTGCGAGGAAGTCTAGGAGAGTAATGCGTGATGGAGTTGAAGGAAATTCATTGCAAGGAGATAATATGGATGATAATCATGCTAACCTCAAACAGACAGTTGGTGATAATACAGGGAAGAATGAGCAAGCACCAATGTCGCTAGATTTTTCTGTCTTTGGATTAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACAGATcacatttaaaaagaaaattagatcTAGAATTCCAGTAA 1233 0.4063 MTELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRIGKQKEGVNFTALREIKLLKELKDPNIIELIDCFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAHCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSPSRWPDMLYLPDYVEYQYVPAPPLRSLFPMATDDALDLLSKMFTYDPKERISVQQALEHRYFSCPPPPTDPEKLPRPAPKGEIKESDLNPHEAPTVLSPARKSRRVMRDGVEGNSLQGDNMDDNHANLKQTVGDNTGKNEQAPMSLDFSVFGLKPPNRPTINSADRSHLKRKLDLEFQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03748 410 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Tsu06g03748 410 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Tsu06g03748 410 PANTHER CELL DIVISION PROTEIN KINASE 9 355 - -
Tsu06g03748 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Tsu06g03748 410 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03748 410 ProSitePatterns Protein kinases ATP-binding region signature. 20 49 IPR017441 GO:0005524
Tsu06g03748 410 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 355 - -
Tsu06g03748 410 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03748 410 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Tsu06g03748 410 MobiDBLite consensus disorder prediction 293 410 - -
Tsu06g03748 410 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03748 410 MobiDBLite consensus disorder prediction 349 375 - -
Tsu06g03748 410 MobiDBLite consensus disorder prediction 307 321 - -
Tsu06g03748 410 SUPERFAMILY Protein kinase-like (PK-like) 10 300 IPR011009 -
Tsu06g03748 410 MobiDBLite consensus disorder prediction 396 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03748 Tsu-Chr6 49721454 49737560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03748 4 409 Core Cell Cycle Gene Families AT1G73690 74.447 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Tsu06g03748 Pkinase 2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03748 K02202 - gmx:100814263 732.25