Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03744 atGACACCATGCACCGATGAATACGAACAAGATAACAATGACCTCAATGCCACCACCGACGATGATGACGACGGTGGTCTCAAAGAAGATATGGCTGCCCTCGCGCGAGCCTGTATGTTCAACGACGATGAAATCCAATCTCAAGAAGATCCACTTTTGGCCTCCGGAGACGCTATTGTCCCCTTCACTGTTACGGCCGACTCTGACTCCGATGAACAGAGTGACCTAGAATGTCTCAAGAGAGTTCAGAGTCTCTACCAGTCTAATAAGGGAACTCTTCCTCCTCCACAGCCGACTACAGCTGCGTCCGACGATGACGAAGATGACTTCGAAACTGTTCGTGCCATTTTCAAACGGTTTTCTGCTTATGATGGAGGTGGAAGGGAAGCATGGGATGAGGGGAATCAGGCCTCGAGTTTAATCGGTGAGCGGAATGTTGCCAAGAGCTCCATGTCTGACAACTCAGATGCCGATGAATTGTGTCCTGATTCTCTATTACCTGATAATGACGCCAAGTTGCTGATTAAACCATGTGGTTTTGACGAGAGTTGTGAAAATGATGCCCATTTGTCTTCTCAATTACCGAAGAAAAGATCAAGCTTTCCTCCTTCAGCTCAAGCTTTTATTGATGCCGTCAAGAAGAATAGAGCTCTCCAGAAATTTCTTAGAAGTAAGTTGATTGAAATTGAAGCAAAAATTGAGGAAAACAAAAAGCTAAGGGACAAAGTTAAACTCCTTAAGGATTTCCAGGTTTCATGCAGTAAAAGAACGGCGAGTGCTTTATCATTGAAGAAGGATCTGCGTGTTCAGTTAATATCATCTAAGAAGTCTGTTGCAACAAATAAGTCAAAGAGCCAGAATAGAAAAGTATCTGCAATGTGTTATGGCCCAGATGAGAATTCTCATGTTGCTAACTATAAGATGGTATTGGAAAGATTTCCGCTTTCATTGGATCGGAAAAAATGGTCAAATAAGGAAAGGGAAAATCTTTCGAAGGGAATTAAGCAACAATTCCAAGAAACCGTGCTTCAAATTTCAGTAGATAGAATGAGTTCAGGTTGCTCACCTGGAGATGCAAATGACATGGATAGCATAATTGAATCAGTTAAAGGTATTGAAATTACACCAGTGAGGATTAGAGAATTTTTACCTAAAGTTAATTGGGATCGATTGGCTTCTATGTATGTTGCTGGCCGTACTGGTGGTGAATGTGAATCAAGGTGGTTGAATTGTGAAGACCCTTTGATCAACCATGGTCCATGGACTTTAGAAGAGGATAGGTCTCTTTTGATTATTGTCCAAGAGAAGGGCATCAGAAACTGGTTTGATATTGCTGTATCATTGGCCACAGACAGGATTCCATTTCAATGCTTGGCACGATTCCAAAGGAGTTTAAATTCTTCGATGATAAATAGTGAATGGACTGAGGACGAAGATGCCCAACTTTGTTCTGCGGTTGCATATTTTGGTGATAGTAATTGGCAGAATGTTGCTTCTGTTTTAGAACGGCGGACGGGAACCCAGTGCTCGAATAGATGGAGAAAATCAATTTGTCCTGTGAGAAAAGGGAGTTTTACTCCTGAGGAGGATGAACGCCTTACAGTAGCAGTCATGCTGTTTGGCCGGAAATGGAATCAAATAGCGAAATATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTTAATAGTTTGGATCCTTCTTTGAAATGGGGTGGATGGACCGAGGAAGAGGATTTAAGATTAGAAGCTGCAATCACTAAGTATGGATATTGCTGGTCTAAGGTTGCTGAAGATGTACCTCCCCGCACCGATTCCCAATGCCGAAAGAGATGGAAGGTGATATGTCCTGAACAAGTCCCTCTTCTTCAAGAAGCGAGAAAGCGGCAAAGGTCTCTTCTTGCCAGTAACTTTGTCGATCGAGAATCTGAACGTCCACCCCTGGCCCTTACGCTGAATGACTTTATTCCTTTACAATCTGATGTTTCACCATCTGATGTTGGTGCTGAAAATCTCCAAAGGAAACGGAAGAGACAGACGAGCGGCGTCCCCAAGAAAGTGAAGTCAGAAAGGACTCAACTGTTTACCAAAGAAGTACAAGATGCAGGTCTCAAGAAAGAGAGGTCTAAAAGACATGCAAAGAAGGGATCATCTTGTCCCGAGGATGTACAACATATAGTTCCCAAGAAAGAGAAGCCTAGAAGACATTCGAAGAAGGCTCGAATTTGTCCTGAGGAAGTACAATATAAAGCAGCATATAGTGATAAGGTCAAGACTTGTGGTGGAGGTGTTCCCTTCATTGTACCGAGCAATATTCCCACGAAAATGAGATCTAAAAGACGTGCTAGAAAGGCTCAAATTTGTCCCGAGGAAGTAGAGAATATATCTTGTAGTGATAAGGTCAAGCCTTGTATCAATAGTTTGGAAACTCAAGATGGAGACAACATAACACTTGCATGCTTTTTGCAcaacaaatcaaagaaaaaaccaTCTAAATGTACCAAAAAGGCTAGCCAGGGTTCGTCTTCCTCTAagacaaaaattgtatctaaGCAGGTTGAAAATCAAATCTCATGTGGTGAGCAACACAGATTGTCTCTGTCATGTGATATTGATGGAACTAAATATTTGCTAATGCAAGCGGAGGTTGATTCTAGCAGACAAGCGAGAAAACTGGAAAGTGCAAATGCAGCTCGAAAACCAGAGGATGCACACAATTTGAATGGTGATAACCAGGATATGCCTCTTAAGTTCTATgtgagaaagaaaaagaaattgaaccAAGCTACTGAAGGACGCGGTGCTTGCTCTCCCTCCAAATTGAAAAAGGGATCTACATTACTCCATGGAAACAAGCTAATCATCGTTTCTGACAGCAGTGAACCATCCATGTCAAAAATTGTTGAAGATGTGATTGTTTTACGTGGTAGTGTGGCTGAAGCTGAACCCACAAACGTCAATGTTGTTGAAGAGGAGACTGTTCTGCATGGTGATGTGGCTGATGCTAAACCCACAAACATCAATTTAGAAGAAAATGATGACCTGCTTATTTCCTTCCTGCAAAACAAGACAAAGAAACAACGTAGACGGAACAATATTAAGAAATGA 3114 0.4149 MTPCTDEYEQDNNDLNATTDDDDDGGLKEDMAALARACMFNDDEIQSQEDPLLASGDAIVPFTVTADSDSDEQSDLECLKRVQSLYQSNKGTLPPPQPTTAASDDDEDDFETVRAIFKRFSAYDGGGREAWDEGNQASSLIGERNVAKSSMSDNSDADELCPDSLLPDNDAKLLIKPCGFDESCENDAHLSSQLPKKRSSFPPSAQAFIDAVKKNRALQKFLRSKLIEIEAKIEENKKLRDKVKLLKDFQVSCSKRTASALSLKKDLRVQLISSKKSVATNKSKSQNRKVSAMCYGPDENSHVANYKMVLERFPLSLDRKKWSNKERENLSKGIKQQFQETVLQISVDRMSSGCSPGDANDMDSIIESVKGIEITPVRIREFLPKVNWDRLASMYVAGRTGGECESRWLNCEDPLINHGPWTLEEDRSLLIIVQEKGIRNWFDIAVSLATDRIPFQCLARFQRSLNSSMINSEWTEDEDAQLCSAVAYFGDSNWQNVASVLERRTGTQCSNRWRKSICPVRKGSFTPEEDERLTVAVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLRLEAAITKYGYCWSKVAEDVPPRTDSQCRKRWKVICPEQVPLLQEARKRQRSLLASNFVDRESERPPLALTLNDFIPLQSDVSPSDVGAENLQRKRKRQTSGVPKKVKSERTQLFTKEVQDAGLKKERSKRHAKKGSSCPEDVQHIVPKKEKPRRHSKKARICPEEVQYKAAYSDKVKTCGGGVPFIVPSNIPTKMRSKRRARKAQICPEEVENISCSDKVKPCINSLETQDGDNITLACFLHNKSKKKPSKCTKKASQGSSSSKTKIVSKQVENQISCGEQHRLSLSCDIDGTKYLLMQAEVDSSRQARKLESANAARKPEDAHNLNGDNQDMPLKFYVRKKKKLNQATEGRGACSPSKLKKGSTLLHGNKLIIVSDSSEPSMSKIVEDVIVLRGSVAEAEPTNVNVVEEETVLHGDVADAKPTNINLEENDDLLISFLQNKTKKQRRRNNIKK 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03744 1037 CDD SANT 473 515 IPR001005 -
Tsu06g03744 1037 Gene3D - 574 619 - -
Tsu06g03744 1037 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 520 567 IPR017930 -
Tsu06g03744 1037 SUPERFAMILY Homeodomain-like 519 614 IPR009057 -
Tsu06g03744 1037 MobiDBLite consensus disorder prediction 13 27 - -
Tsu06g03744 1037 MobiDBLite consensus disorder prediction 87 108 - -
Tsu06g03744 1037 ProSiteProfiles Myb-like domain profile. 521 567 IPR001005 -
Tsu06g03744 1037 Gene3D - 519 573 - -
Tsu06g03744 1037 CDD SANT 420 465 IPR001005 -
Tsu06g03744 1037 MobiDBLite consensus disorder prediction 891 915 - -
Tsu06g03744 1037 MobiDBLite consensus disorder prediction 692 709 - -
Tsu06g03744 1037 CDD SANT 576 615 IPR001005 -
Tsu06g03744 1037 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 568 622 IPR017930 -
Tsu06g03744 1037 SUPERFAMILY Homeodomain-like 394 446 IPR009057 -
Tsu06g03744 1037 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 474 515 IPR017930 -
Tsu06g03744 1037 SMART sant 470 519 IPR001005 -
Tsu06g03744 1037 SMART sant 572 620 IPR001005 -
Tsu06g03744 1037 SMART sant 521 569 IPR001005 -
Tsu06g03744 1037 SMART sant 318 414 IPR001005 -
Tsu06g03744 1037 SMART sant 417 467 IPR001005 -
Tsu06g03744 1037 MobiDBLite consensus disorder prediction 665 741 - -
Tsu06g03744 1037 Coils Coil 222 242 - -
Tsu06g03744 1037 CDD SANT 524 567 IPR001005 -
Tsu06g03744 1037 MobiDBLite consensus disorder prediction 891 909 - -
Tsu06g03744 1037 SUPERFAMILY Homeodomain-like 450 517 IPR009057 -
Tsu06g03744 1037 MobiDBLite consensus disorder prediction 831 850 - -
Tsu06g03744 1037 Pfam Myb-like DNA-binding domain 522 565 IPR001005 -
Tsu06g03744 1037 Pfam Myb-like DNA-binding domain 472 515 IPR001005 -
Tsu06g03744 1037 Pfam Myb-like DNA-binding domain 575 615 IPR001005 -
Tsu06g03744 1037 ProSiteProfiles Myb-like domain profile. 466 517 IPR001005 -
Tsu06g03744 1037 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 19 902 - -
Tsu06g03744 1037 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 413 469 IPR017930 -
Tsu06g03744 1037 Gene3D - 415 464 - -
Tsu06g03744 1037 Gene3D - 465 516 - -
Tsu06g03744 1037 ProSiteProfiles Myb-like domain profile. 413 465 IPR001005 -
Tsu06g03744 1037 MobiDBLite consensus disorder prediction 716 731 - -
Tsu06g03744 1037 MobiDBLite consensus disorder prediction 1 29 - -
Tsu06g03744 1037 ProSiteProfiles Myb-like domain profile. 568 618 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03744 Tsu-Chr6 49630213 49641883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03744 152 653 MYB-Related Transcription Factor Family AT3G18100 49.612 3.63e-170 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g03744 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03744 K09422 - gmx:778073 1030.78