Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03743 ATGGATATCGAGGAGGACATCCGATCTTTACAACTTGAGTCAGCAGATATAGCAGAAGACAGCAATGGGGTTGTAAGTCCAGATGAGGCAAAGACAGAAGTTAAGGAATCTATTAATACAGAACAAGAAGATCCTAAGCAAGAGGTTCAAGCACAATCTATTAAGACCGAGATAAAAGATAAGGAAATTCCTCCGGTGCAAGATGAAAAAGATGACGACGAGATAACTAAGAAACGACACTTAAATGTTGTATTTATTGGTCATGTGGATGCTGGTAAGTCTACAACAGGAGGCCAGATACTTTACCTCAGTGGTCAGGTCGATGAACGGACTATCCAAAAATACGAGAAGGAAGCCAAGGACAAAAGTAGAGAAAGCTGGTATATGGCTTACATAATGGACACAAATGAGGAGGAGAGGGCGAAGGGAAAGACAGTTGAAGTTGGAAGAGCGCATTTTGAGACAGAGACATCAAGGTTTACGATTTTGGATGCACCAGGTCATAAGAGTTATGTCCCTAACATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTATTGGTAATTTCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAGAAAGGTGGTCAAACCCGTGAACATGTCCAGCTTGCAAAAACACTGGGCGTGTCTAAGCTGCTTGTTGTTGTTAATAAAATGGATGATCCTACAGTAAAGTGGTCAAAAGATAGGTACGTAGATATTGAGGCGAAGATGATACCATTTCTTAAGCAATCTGGTTACAATGTGAAGAAAGatgttcagtttttacctATATCTGGGCTGATTGGTGCAAACCTAAAAACAAGATTGGATAGAAGCATTTGTCCATGGTGGGATGGTCCTTGTCTATTTGAAGCTCTTGACGCTATTGAAGTTCCTCTACGAGATCCCAATGGTCCTTTCAGGATGCCTATACTCGACAAATTCAAAGACATGGGAACTGTCGTTATGGGCAAAGTGGAATCTGGTAGTATTCGTGAGGGAGATTCCTTGTTGATTATGCCAAATAAGGATCATGTGAAAGTTGttgctatatatattgatgaGAATCGGGTTAAACGTGCTGGACCTGGCGAAAATTTACGGGTTAGAGTATCcggtgttgaagaagaagatataTCATCTGGATTTGTCTTGTCTAGTACCGCAAGTCCAATACCAGCTGTCACTGAGTTTGTTGCCCAGTTGTCAATCCTTGAATTGCTGGACAATGCAATTTTTACTGCTGGGTACAAGGCTATGTTGCATGTCCACTCTATTGTTGAAGAATGTGAAGTTATTGAGCTCATACATCAAATTGATCTAAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCAGGTGTTGTGTGCCGAATTCAGGTTAGTAACTCTATATGCATCGAGAAATTCTCTGACTTTCCACAGCTTGGGAGATTCACTCTTCGCACGGAAGGAAAAACTGTTGCAGTGGGAAGAGTCaatgatttttaa 1515 0.396 MDIEEDIRSLQLESADIAEDSNGVVSPDEAKTEVKESINTEQEDPKQEVQAQSIKTEIKDKEIPPVQDEKDDDEITKKRHLNVVFIGHVDAGKSTTGGQILYLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETETSRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVSKLLVVVNKMDDPTVKWSKDRYVDIEAKMIPFLKQSGYNVKKDVQFLPISGLIGANLKTRLDRSICPWWDGPCLFEALDAIEVPLRDPNGPFRMPILDKFKDMGTVVMGKVESGSIREGDSLLIMPNKDHVKVVAIYIDENRVKRAGPGENLRVRVSGVEEEDISSGFVLSSTASPIPAVTEFVAQLSILELLDNAIFTAGYKAMLHVHSIVEECEVIELIHQIDLKTKKPMKKKVLFVKNGAGVVCRIQVSNSICIEKFSDFPQLGRFTLRTEGKTVAVGRVNDF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03743 504 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 399 503 IPR009001 -
Tsu06g03743 504 SUPERFAMILY Translation proteins 301 394 IPR009000 -
Tsu06g03743 504 Gene3D - 58 302 IPR027417 -
Tsu06g03743 504 CDD EF1_alpha 82 302 - -
Tsu06g03743 504 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 78 304 IPR000795 GO:0003924|GO:0005525
Tsu06g03743 504 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 134 149 IPR031157 -
Tsu06g03743 504 Gene3D Translation factors 307 392 - -
Tsu06g03743 504 Gene3D Translation factors 397 504 - -
Tsu06g03743 504 Pfam Elongation factor Tu GTP binding domain 78 280 IPR000795 GO:0003924|GO:0005525
Tsu06g03743 504 PANTHER BNAA06G12300D PROTEIN 72 498 - -
Tsu06g03743 504 MobiDBLite consensus disorder prediction 29 73 - -
Tsu06g03743 504 CDD eRF3_C_III 396 501 - -
Tsu06g03743 504 MobiDBLite consensus disorder prediction 1 73 - -
Tsu06g03743 504 PANTHER TRANSLATION FACTOR 72 498 - -
Tsu06g03743 504 Pfam Elongation factor Tu domain 2 322 388 IPR004161 GO:0005525
Tsu06g03743 504 Pfam Elongation factor Tu C-terminal domain 395 502 IPR004160 -
Tsu06g03743 504 PRINTS GTP-binding elongation factor signature 82 95 IPR000795 GO:0003924|GO:0005525
Tsu06g03743 504 PRINTS GTP-binding elongation factor signature 141 149 IPR000795 GO:0003924|GO:0005525
Tsu06g03743 504 PRINTS GTP-binding elongation factor signature 221 230 IPR000795 GO:0003924|GO:0005525
Tsu06g03743 504 PRINTS GTP-binding elongation factor signature 161 171 IPR000795 GO:0003924|GO:0005525
Tsu06g03743 504 PRINTS GTP-binding elongation factor signature 177 188 IPR000795 GO:0003924|GO:0005525
Tsu06g03743 504 CDD eRF3_II 309 390 - -
Tsu06g03743 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 313 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03743 Tsu-Chr6 49601907 49616294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03743 78 499 Eukaryotic Initiation Factors Gene Family AT5G60390 38.084 1.55e-95 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03743 K03267 - gmx:100793653 844.728