Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03739 ATGGACCCATCCTCGATCTCTTCACCTCCAGCTCCGGCTCCGAACGCCGTCCCCTTCGCCGTCGAACCAAACAACAACCCTCCTCCACCACCGCCTCATCCATCTCCACCTACAATTCACCCACCCTATGCCGAGATGATATACACAGCAATTGAAGCTTTGAAAGAGCAAAACGGTTCAAGCAAAAGAGCAATAGCTAAATACATAGAACATGTTTACAAAGACCAACTTCCACCTTCACACACAACCTTGTTGACTCATCACTTGAAGCGTTTGAAATCTGATGGTTTACTTTCTATGGTTAAAAATTCATACATAATCCCTAGATCTACTCCACCTCCACCTTCTTCTTCACCTACTCAACCTACAAGACCACGTGGCAGACCCAGAAAACCCCAAACCCAATCTCAACCTCAACCACTTGTTgctaacaacaacaacaacaacaacgcgGCTCACCAACAAGCCCAAAATGCTGAACCTGTTTGGGCCGCACTTGGGCTTGCTGATGAGCCATCTGCCGCTGTTTCTGAGGGGAGTAAAAGAGGTCGTGGGCGTCCTAAGAAAGGGACAGgcccaagcccaagcccaagcccaGTACCGATTCAAGCTGGCGTGGTTCCACCTACACCTTCTCGAGGTAGAGGACGTCCGCCTGGGTCTAAAGCTAAATCAAAGAGGAGGCCTGGACGTCCACCCAAGGTGCAGCCGGAGACTACAGCTGCTGTTTCTAGTGGTAGTTTGAAGAAAAGACCGGGGCGTCCACCCAAGAATCAAAAGCAGAATCCGACTCCGATACCGTTTGCTGCACCTGTGCCTGAAGTGGTAGTGCCGACGACTGGAGTGGAAGAGGTTGCTGTTTTGACTCCGAGATCTAGAGGAAGGCCTAGAAAGAATTCTGCTGTTGGTGTTGTGcctgttgctgttgttgttgctggGAGAGGTAGAGGCCGCGGAAGAGGTCGTGGTGGTGGTGGCCGTGGAAGAGGCGGCGTGGGTGTTACTGTTCAGGCTAGACCTGCTGGAAAAAGGCCTGTGGGTCGACCAAAGAAGGGAACAACACCTGCTACTGCCAGTGATTCAGAAAATGCTGCTAATGAAGATCTCAAGAGGAAACTCGAACACTTTCAAGGAAAAGTCAAGGAATCTCTTGCCGTGCTTAGGCCTCATTTTAACCATGAAAGTCCGGTCACTGCAATTGCGGCAATTCAAGAGTTGGAAATACTCGTAGCTATGGATCTTAATGAACCACTAAAGGATGAACCACTTTCACAGCAACAGAACCTGCCAGTACAAGATCAGCAACCACCGCAGGCCCCACCACAGCCGGTGCCACTGCAACATCTTCCAGCACAACAAATAGCGCATGTGCCACAGGTCTTTCCACAATATCCACCGTTTCATATTCAGGAGTTCCAATTCCAGCAGCAGCAGCCGCTATACCAACCACCACCGCCACAGCAGAACCAGTTTCATCCTTAG 1482 0.4777 MDPSSISSPPAPAPNAVPFAVEPNNNPPPPPPHPSPPTIHPPYAEMIYTAIEALKEQNGSSKRAIAKYIEHVYKDQLPPSHTTLLTHHLKRLKSDGLLSMVKNSYIIPRSTPPPPSSSPTQPTRPRGRPRKPQTQSQPQPLVANNNNNNNAAHQQAQNAEPVWAALGLADEPSAAVSEGSKRGRGRPKKGTGPSPSPSPVPIQAGVVPPTPSRGRGRPPGSKAKSKRRPGRPPKVQPETTAAVSSGSLKKRPGRPPKNQKQNPTPIPFAAPVPEVVVPTTGVEEVAVLTPRSRGRPRKNSAVGVVPVAVVVAGRGRGRGRGRGGGGRGRGGVGVTVQARPAGKRPVGRPKKGTTPATASDSENAANEDLKRKLEHFQGKVKESLAVLRPHFNHESPVTAIAAIQELEILVAMDLNEPLKDEPLSQQQNLPVQDQQPPQAPPQPVPLQHLPAQQIAHVPQVFPQYPPFHIQEFQFQQQQPLYQPPPPQQNQFHP 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03739 493 MobiDBLite consensus disorder prediction 479 493 - -
Tsu06g03739 493 MobiDBLite consensus disorder prediction 127 157 - -
Tsu06g03739 493 MobiDBLite consensus disorder prediction 315 374 - -
Tsu06g03739 493 MobiDBLite consensus disorder prediction 105 272 - -
Tsu06g03739 493 MobiDBLite consensus disorder prediction 1 42 - -
Tsu06g03739 493 MobiDBLite consensus disorder prediction 258 272 - -
Tsu06g03739 493 PRINTS Histone H5 signature 26 47 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu06g03739 493 PRINTS Histone H5 signature 53 70 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu06g03739 493 PRINTS Histone H5 signature 177 196 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu06g03739 493 MobiDBLite consensus disorder prediction 474 493 - -
Tsu06g03739 493 MobiDBLite consensus disorder prediction 422 451 - -
Tsu06g03739 493 Pfam linker histone H1 and H5 family 40 103 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu06g03739 493 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 39 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu06g03739 493 SUPERFAMILY "Winged helix" DNA-binding domain 35 114 IPR036390 -
Tsu06g03739 493 PRINTS AT-hook-like domain signature 181 191 IPR017956 GO:0003677
Tsu06g03739 493 PRINTS AT-hook-like domain signature 341 351 IPR017956 GO:0003677
Tsu06g03739 493 PRINTS AT-hook-like domain signature 210 221 IPR017956 GO:0003677
Tsu06g03739 493 SMART AT_hook_2 181 193 IPR017956 GO:0003677
Tsu06g03739 493 SMART AT_hook_2 226 238 IPR017956 GO:0003677
Tsu06g03739 493 SMART AT_hook_2 212 224 IPR017956 GO:0003677
Tsu06g03739 493 SMART AT_hook_2 249 261 IPR017956 GO:0003677
Tsu06g03739 493 SMART AT_hook_2 343 355 IPR017956 GO:0003677
Tsu06g03739 493 SMART AT_hook_2 290 302 IPR017956 GO:0003677
Tsu06g03739 493 SMART AT_hook_2 123 135 IPR017956 GO:0003677
Tsu06g03739 493 MobiDBLite consensus disorder prediction 1 41 - -
Tsu06g03739 493 MobiDBLite consensus disorder prediction 192 206 - -
Tsu06g03739 493 PANTHER HISTONE H1 22 425 - -
Tsu06g03739 493 PANTHER HISTONE H1-LIKE 22 425 - -
Tsu06g03739 493 Gene3D - 36 118 IPR036388 -
Tsu06g03739 493 CDD H15 43 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu06g03739 493 MobiDBLite consensus disorder prediction 108 126 - -
Tsu06g03739 493 SMART h15plus2 37 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03739 Tsu-Chr6 49505098 49509657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03739 20 112 Single Myb Histone (SMH) Gene Family AT1G49950 38.710 4.69e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03739 - - mtr:MTR_6g079520 393.275