Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03690 ATGATTGTAGTATTCGGCTTCTGGATAGCAATCTCTCCCTCAAGTGTGAAATTCTACATAACCGACGCAACACTCACCGAGTTCAACCTCACAAACAATAACTTAAATTACAATTTCAAAGTGAACATCACGGTAAGAAACcccaacaacaacatcatagtCTATTATCGAAGAATCAATGCAATTGCTTGGTACAAAGACAATGATTTTAGTCGCGTGAGTTTGACACCCTTTGATCAAGGACATAAGAATACCACTTTTCTTGGACCTATAGAATTTAAAGGAAATTCTAAGATCAAACTTGGACGTCAACAACTTGACGAGTATTCTGAAGAGACACGTCTTGGGATTTATAGCGATTTGGCTGTTGATTTTGATGTTCGAATTAGAGCTAAGTTTGGAAGCTTTTATAAAAGTGGTCGGTTTAATCCACCGGTAGTGCAGTGTCGTCGTTTGAGAGTTcctttggtttcttcttccaACGGcaactcatcatcatcatcatcaacattttcTTTTAGTGAAAAAAGATGCAGCAGTGGTTCTTTCTTTGCAGATCGTGATTTAGATAAAGTAGCTTCTGCTTCTTGA 591 0.335 MIVVFGFWIAISPSSVKFYITDATLTEFNLTNNNLNYNFKVNITVRNPNNNIIVYYRRINAIAWYKDNDFSRVSLTPFDQGHKNTTFLGPIEFKGNSKIKLGRQQLDEYSEETRLGIYSDLAVDFDVRIRAKFGSFYKSGRFNPPVVQCRRLRVPLVSSSNGNSSSSSSTFSFSEKRCSSGSFFADRDLDKVASAS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03690 196 MobiDBLite consensus disorder prediction 157 178 - -
Tsu06g03690 196 PANTHER OS05G0367900 PROTEIN 1 184 IPR044839 GO:0098542
Tsu06g03690 196 PANTHER HARPIN-INDUCED 1 1 184 - -
Tsu06g03690 196 Pfam Late embryogenesis abundant protein 42 142 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03690 Tsu-Chr6 48918390 48918980 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03690 11 161 SNARE and Associated Proteins AT1G32270 30.065 6.42e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03690 - - mtr:MTR_6g070890 276.559