Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03689 ATGTTCTTTTTCATGATTTTCTCAATCATCTTCTGGATAGTAATCTCCCCCACAAGTGTGAAATTCCACGTAACTGACGCTACTCTCTCCGAGTTCAACctcacaaacaacaacaacaccttATATTACAATTTCAAACTCAATGTCACAGCACGAAACcccaacaacaacatcatagtCTATTATCGAAGAATCACTGCAATCGCTTGGTACAAAGACAATGAAGTTGGTTATCTGAGTTTAACACCCTTTGATCAAGGACACAAGAATACCACTTTTCTTGGACCTATAGAGTTTAAAGGGAATACAAGGTTCAAACTTGGACATAAACAACTTGACGAGTATTTTGAAGAAACGCGTCTTGGGGTTTATAATGATTTGGCTGTTGATTTCGATGTTCGAATTAGAGCTAAATTTGGCGGATTTAAAAGCGGTCGTTTTAATCCACCGGTTGTGCAGTGTCGTCGTTTGAGAGTTCCTTTAGTTTCATCCAATGGAACAAActcatcatcaacattttcTTTTAGTGACAGAAGATGTAGTAGTGGCTCTTTCTTTACAGATCGTGATGCAGATGCAGGAGCTTAA 588 0.3452 MFFFMIFSIIFWIVISPTSVKFHVTDATLSEFNLTNNNNTLYYNFKLNVTARNPNNNIIVYYRRITAIAWYKDNEVGYLSLTPFDQGHKNTTFLGPIEFKGNTRFKLGHKQLDEYFEETRLGVYNDLAVDFDVRIRAKFGGFKSGRFNPPVVQCRRLRVPLVSSNGTNSSSTFSFSDRRCSSGSFFTDRDADAGA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03689 195 Pfam Late embryogenesis abundant protein 48 148 IPR004864 -
Tsu06g03689 195 PANTHER HARPIN-INDUCED 1 1 186 - -
Tsu06g03689 195 PANTHER OS05G0367900 PROTEIN 1 186 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03689 Tsu-Chr6 48913333 48913920 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03689 14 167 SNARE and Associated Proteins AT1G32270 32.051 3.04e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03689 - - mtr:MTR_6g070890 309.686