Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03675 ATGCCTCAAGTGTATAGCAGGGAGAGCATGAGGACCACAAAAAAATTCAGACACAGCTTCAATAACAATCTAAGCATTTCTCGAAGTGCTGTTCCTGAATTCTGTTCCTCTTCTGGTCAGAAGGAACATTCGAAAGGAATGAGCTTGCAGATACGAAAAGAGAGGAGGGAAGGGGGATCAAGGTTCCCACCACAACGTGCTCCTCGTCAAGAATGGGTTCCGAAAGGAACTGGAGCATCACCCACCACTGCTGCCACCACCTCCACCACTGCTCCCACAACCACTGCCACCGCCACCACAGCTGTTGTCGACCCTACAAGTTTGCACTCTCGTCAGAAGAACACTAATGGTGATAGTGGTTCATCCAATCAAGGATCTGTTGTTACTCCGTTGGCTAGGCATAGAAGAAATCATCATGTTACTCATCGTGTGGAAAGGGAACATGTCGCTCGTGTTGAAAGGGAACATGTTGGTCATCGGGCAGAAAGGGAACATGTTGCTCATAGGGTTGAAAGGGAACATGTTGCTCATCAAGTGGAAAGGGAAAATGTAGCTCATCGGGTGGAAAGGGAAAATGTTGCTCATCGGGTGGAAAGGGAACATGTTGCTCATCGGGTGGAAAGGGATAAAGGGAGGAGTGGTAATACAGCCGGGAGGGAATACGGATCGAGGGACTCTAGTTTGCCTCAATTGGTGCAAGAGATTCAGGAGAAGCTCACAAGAGGTACAGTTGAGTGCATGATTTGCTATGATATGGTTCGTAGGTCTGCGCCTATTTGGTCTTGCTCCAGCTGCTACTCTATCTTTCACCTTAATTGTATAAAGAAGTGGGCTCGTGCTCCTACCTCGGTTGATTTATCGGCGGAGAAGAATCTAGGGTTTAATTGGCGGTGTCCTGGTTGTCAGTTTGTGCAGCATACGTCTTCAAGGGATATTAAATATGTTTGCTTTTGTGGGAAGAGGACAGACCCTCCACATGATTTGTATCTGACACCTCATTCGTGTGGTGAACCGTGTGGGAAGCCTCTTGAGAAGGAGGTGTTGTCTGCTGAAGGGATAAAGGATCAGCTTTGTCCTCATGCTTGTGTCTTGCAATGCCATCCTGGTCCATGTCCTCCGTGTAAAGCATTTGCCCCTCCTCGTTTGTGTCCTTGTGGAAAGAAAAGAATTGCCACCCGTTGCTCTGATCGGCAGTCTGATCTTACTTGTGGTCAGCGCTGTGATAAGCTTCTTAATTGTGGACGACATCGCTGTGAAAATGCTTGCCATGTGGGTCCTTGTGATCCTTGTCAGGTGCTAATCGATGCCTCTTGCTTTTGCAGTAAAATGATGCAGGTTATTTTTTGTGGAGAGATGGCAACGAAAGGTGAATTTAAAGTAGAAGATGGAGTTTTTTCTTGTGGTTCTAATTGTGGAAAGGAACTTAGTTGCGGTAATCATATCTGCCGTGATGTTTGTCATCCAGGCGGCTGTGGTGAATGTGAATTTTTACCAAGCCGGGTTAAGACATGCTGTTGTGGAAAAACGAAGTTGGAGGACGAACGGAAGAGTTGTGTGGATCCGATACCTACGTGCTCACAAGTATGTGACAAGCTGCTTCCTTGTGGGATACATGCTTGTAAGGAGCCATGCCATGTTGGGGAATGTCCACCGTGTCAGGTCCTAATTTCACAGAAATGCCGTTGTGGCTCAACTTCGCGAACTGTTGAATGCTATAAAACAATAACGGAGAATCAGAAATTTACTTGTGAAAAGCCGTGTGGGGCAAAGAAGAATTGTGGAAAGCATCGATGTAGCGAAAAATGTTGTCCATTGTCTGGTCCAAATAAGGACATGACTATTGCGGATTGGGATCCTCACTTTTGTTCCATGCTTTGTGGAAAGAAGCTGAGATGTGGCCAGCATGTATGCGAAACGTTGTGTCACAGTGGTCATTGCCCACCGTGTCTTGAAACAATCTTCACCGATTTAACATGTGCTTGTGGTAGGACTTCAATTCCTCCTCCCCTACCTTGTGGTACAATGCCTCCCTTATGTCAACTTCCATGTTCAGTTCCTCAGCCATGTGGTCATTTGGGCTCTCATAGTTGCCATTTTGGAGATTGCCCTCCTTGTTCAGTACCCGTGTCGAAAGAATGTGTCGGTGGCCATGTCATTCTTAGGAATATACCTTGTGGCTCAAATAATATTAGATGTAATAATCCCTGTGGAAGGACTAGACAATGTGGTTTACATGCATGTGGAAGAACATGCCACTCACCACCTTGTGATACTCTCCCTGATTTTGTGAAAGGATACCGAGCGCCATGTGGGCAGACATGTGGTGCTCCAAGGAGTGGCTGCCGGCATATGTGTATGGCTCAATGTCACCCTACCATGTCTTGCCCTGATGTAAGATGCGAGTTCCCCGTTACAATTACTTGCTCTTGTGGCCGCATATCAGCTAATGTTCCTTGTGATGTGGGTGGTAGCAATAGTAACTATAATGCTGATGCAATTTATGAAGCTTCCATTATTCAAAAATTGCCCGTGCCACTTCAATCGATTGATGCCAACGGCCAAAAAGTTCCCCTTGGACAAAGAAAGCTGATGTGTGATGAGGAATGTGCTAAGTTGGAACGTAAAAGGGTTCTTGCCGATGCCTTTGACATCACTCCAAGTCTTGATGCTCTCCATTTCGGTGAGAATTCTTCTTTTGAATTGCTTTCTGACACATTTAGACGTGATCCAAAGTGGGTTTTGGCTATTGAAGAGAGATGCAAAATATTAGTACTTGGGAAAAGCAAAGGAACTACACATGGTTTAAAGCTCCATGTCTTTTGCCCTATGATAAAGGATAAAAGGGATGCCGTGAGATTGATTGCTGAAAGATGGAAGCTTGCGGTGAATGCTGCTGGTTGGGAACCAAAGCGATTTATCGTAATTTCTGTTACTCAAAAATCTAAGGCCCCAGCTCGTGTGCTTGGTGTTAAGGGTACCACAACTTTAAACGCACCACTTCCTACTGCATTTGATCCCTTGGTTGATATGGACCCAAGGCTTGTTGTCTCGTTTCCAGACTTGCCAAGGGACGCTGATATTAGTGCCTTGGTTTTGAGATTTGGCGGAGAATGTGAGCTTGTTTGGTTGAACGACAAAAATGCTTTGGCTGTTTTTCATGATCCTGCCCGAGCTGCAACTGCGATGAGGAGATTGGATCACGGAACAGTTTATCAGGGTGCTGTTTCTTTTGTCCAGAATGCCGGAGCATCAGCGGTGTCTTCGGTTAGCAATGCATGGGGAGGTACGAAAGATGGAGGAGGACTGTCAACACTGAGAAGTAATCCATGGAAAAAGGCGGTTGTTCTCGACCCAGGATGGAAAGAAGATTCATGGGGTGATGAACAATGGGCTACCGGTGGTTCTGCAAATATTCAACCATCGGCGGTTTTGAAGAAAGAAGCGCCAATACCTGCTTCATTGAATCCTTGGAATGTTTTAAACCAGGAATCGTGTTCGAGTTCATCACCGACAACCGTCATGAAAAATTTAGCTTTTGGAAAACAAACTGAAAGCGGCGATGTCTCAACTAGGGTGGAGTCTTCTTCAGGCGGCGCAAATGGAGGAAACTTGGATGCAAGAGAAGACTCTGAAGTTGTAGATGATTGGGAGAAGGCTTTTGAATGA 3666 0.4588 MPQVYSRESMRTTKKFRHSFNNNLSISRSAVPEFCSSSGQKEHSKGMSLQIRKERREGGSRFPPQRAPRQEWVPKGTGASPTTAATTSTTAPTTTATATTAVVDPTSLHSRQKNTNGDSGSSNQGSVVTPLARHRRNHHVTHRVEREHVARVEREHVGHRAEREHVAHRVEREHVAHQVERENVAHRVERENVAHRVEREHVAHRVERDKGRSGNTAGREYGSRDSSLPQLVQEIQEKLTRGTVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSVDLSAEKNLGFNWRCPGCQFVQHTSSRDIKYVCFCGKRTDPPHDLYLTPHSCGEPCGKPLEKEVLSAEGIKDQLCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKRIATRCSDRQSDLTCGQRCDKLLNCGRHRCENACHVGPCDPCQVLIDASCFCSKMMQVIFCGEMATKGEFKVEDGVFSCGSNCGKELSCGNHICRDVCHPGGCGECEFLPSRVKTCCCGKTKLEDERKSCVDPIPTCSQVCDKLLPCGIHACKEPCHVGECPPCQVLISQKCRCGSTSRTVECYKTITENQKFTCEKPCGAKKNCGKHRCSEKCCPLSGPNKDMTIADWDPHFCSMLCGKKLRCGQHVCETLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTMPPLCQLPCSVPQPCGHLGSHSCHFGDCPPCSVPVSKECVGGHVILRNIPCGSNNIRCNNPCGRTRQCGLHACGRTCHSPPCDTLPDFVKGYRAPCGQTCGAPRSGCRHMCMAQCHPTMSCPDVRCEFPVTITCSCGRISANVPCDVGGSNSNYNADAIYEASIIQKLPVPLQSIDANGQKVPLGQRKLMCDEECAKLERKRVLADAFDITPSLDALHFGENSSFELLSDTFRRDPKWVLAIEERCKILVLGKSKGTTHGLKLHVFCPMIKDKRDAVRLIAERWKLAVNAAGWEPKRFIVISVTQKSKAPARVLGVKGTTTLNAPLPTAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTVYQGAVSFVQNAGASAVSSVSNAWGGTKDGGGLSTLRSNPWKKAVVLDPGWKEDSWGDEQWATGGSANIQPSAVLKKEAPIPASLNPWNVLNQESCSSSSPTTVMKNLAFGKQTESGDVSTRVESSSGGANGGNLDAREDSEVVDDWEKAFE 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03675 1221 MobiDBLite consensus disorder prediction 1207 1221 - -
Tsu06g03675 1221 MobiDBLite consensus disorder prediction 21 45 - -
Tsu06g03675 1221 CDD NF-X1-zinc-finger 467 512 - -
Tsu06g03675 1221 Pfam NF-X1 type zinc finger 477 494 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 Pfam NF-X1 type zinc finger 413 431 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 Pfam NF-X1 type zinc finger 593 604 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 Pfam NF-X1 type zinc finger 742 757 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 Pfam NF-X1 type zinc finger 689 706 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 Pfam NF-X1 type zinc finger 632 649 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 Pfam NF-X1 type zinc finger 535 553 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 Pfam NF-X1 type zinc finger 360 375 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 SMART znfxneu3 689 707 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 SMART znfxneu3 593 624 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 SMART znfxneu3 477 496 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 SMART znfxneu3 781 802 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 SMART znfxneu3 535 554 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 SMART znfxneu3 632 651 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 SMART znfxneu3 358 376 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 SMART znfxneu3 413 432 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 SMART znfxneu3 742 772 IPR000967 GO:0005634|GO:0008270
Tsu06g03675 1221 CDD NF-X1-zinc-finger 525 573 - -
Tsu06g03675 1221 CDD RING-CH-C4HC3_NFX1 245 302 - -
Tsu06g03675 1221 MobiDBLite consensus disorder prediction 1179 1221 - -
Tsu06g03675 1221 MobiDBLite consensus disorder prediction 1179 1201 - -
Tsu06g03675 1221 CDD NF-X1-zinc-finger 403 451 - -
Tsu06g03675 1221 MobiDBLite consensus disorder prediction 46 62 - -
Tsu06g03675 1221 CDD NF-X1-zinc-finger 679 727 - -
Tsu06g03675 1221 SUPERFAMILY RING/U-box 236 306 - -
Tsu06g03675 1221 MobiDBLite consensus disorder prediction 21 130 - -
Tsu06g03675 1221 CDD NF-X1-zinc-finger 335 396 - -
Tsu06g03675 1221 ProSiteProfiles Zinc finger RING-type profile. 246 302 IPR001841 -
Tsu06g03675 1221 MobiDBLite consensus disorder prediction 76 130 - -
Tsu06g03675 1221 ProSiteProfiles Zinc finger PHD-type profile. 243 304 IPR019787 -
Tsu06g03675 1221 MobiDBLite consensus disorder prediction 203 226 - -
Tsu06g03675 1221 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 214 1217 - -
Tsu06g03675 1221 CDD NF-X1-zinc-finger 622 674 - -
Tsu06g03675 1221 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 214 1217 IPR034078 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03675 Tsu-Chr6 48636444 48642334 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Tsu06g03675 zf-NF-X1 0.3 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03675 K12236 - gmx:100819219 1646.71