Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03670 ATGGCGTTAGTCCACCGCCGCCGCAGCCCCAATCTCCGTCTCCCAGAAATCGCCGACCACCGTCCTCGTTTCCCTGTCCCTCTTCCTGCCAACATCTACAAACACCCTTCTACCTCCTCATCCACCGCCGTTGCCGGCGGTGACACTCTTGCGCCCGGTGATCTCGAAAAGCTCTCTGTCCTCGGCCATGGCAACGGCGGCACCGTCTATAAAGTCCGCCACAAAGTTACCTCAGCCATCTACGCTTTAAAAGTAAACCACAACGACTCTGACCCCATCACGCGCCGCCGTACACTTGCCGAACTCAACATCCTTCGTCGCGCCGCCGATTGTCCCAACATCGTTAAATACCACGGCTCCTTCGAGAAACCCACCGGAGACATCTCCATATTAATGGAATTCATGGACTCCGGAAGCCTAGAAACTGATCTCAAAACAAATGGCACGTTCTCAGAATCAAAACTCTCCACGGTAGCGCGTGATGTTTTAAACGGCCTCGCGTATCTTCACGCGCGTAATATAGCACACCGTGACATTAAACCTTCGAACATCCTCGTAAACAACAAAAACGAGGTTAAGATTGCTGATTTTGGTGTAAGTAAATTCATGGGTCGCACGCTTGAAGCATGTAACTCTTACGTTGGCACGTGTGCTTATATGAGTCCTGAACGGTTTGACCCGGAAGTTTATGGCGGGAACTATAACGGTTTTTCAGCTGATATATGGAGTTTGGGTTTAACCCTATTTGAACTTTATGTGGgtcattttccatttcttcaatCAGGTCAACGACCCGATTGGGCTACACTTATGTGTGCTATTTGCTTTTCCGACCCACCGAGCCTCCCCGATACTGCATCATCGGAGTTTCGCAACTTTGTCGAGTGTTGCCTTAAGAAGGAATCCGGGGAACGGTGGACGGCGGCGCAGTTGTTAACCCACCCGTTCTTGTGTAAAGACATGGAAGTTTGTTAA 975 0.4954 MALVHRRRSPNLRLPEIADHRPRFPVPLPANIYKHPSTSSSTAVAGGDTLAPGDLEKLSVLGHGNGGTVYKVRHKVTSAIYALKVNHNDSDPITRRRTLAELNILRRAADCPNIVKYHGSFEKPTGDISILMEFMDSGSLETDLKTNGTFSESKLSTVARDVLNGLAYLHARNIAHRDIKPSNILVNNKNEVKIADFGVSKFMGRTLEACNSYVGTCAYMSPERFDPEVYGGNYNGFSADIWSLGLTLFELYVGHFPFLQSGQRPDWATLMCAICFSDPPSLPDTASSEFRNFVECCLKKESGERWTAAQLLTHPFLCKDMEVC 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03670 324 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 321 - -
Tsu06g03670 324 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Tsu06g03670 324 SMART serkin_6 55 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03670 324 Pfam Protein kinase domain 56 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03670 324 ProSiteProfiles Protein kinase domain profile. 55 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03670 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Tsu06g03670 324 Gene3D Phosphorylase Kinase; domain 1 34 136 - -
Tsu06g03670 324 SUPERFAMILY Protein kinase-like (PK-like) 52 319 IPR011009 -
Tsu06g03670 324 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 2 321 - -
Tsu06g03670 324 Gene3D Transferase(Phosphotransferase) domain 1 138 323 - -
Tsu06g03670 324 CDD PKc_MAPKK_plant_like 54 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03670 Tsu-Chr6 48550736 48552341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03670 1 321 MAP Kinase Kinase Gene Family AT1G73500 58.025 4.12e-125 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Tsu06g03670 Pkinase 5.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03670 K20604 - gmx:100804100 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03670 06 48550736 48552341 Tsu06g03670 06 48550736 48552341 ECH