Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03665 ATGGAAGTGGTGATACCAAATCAATTTAAGTGTCCAATAACTCTTGATTTGATGAAAGATCCTGTTACATTGTCAACAGGAATCACTTATGATAGAGAAAGTGTCGAAAGATGGTTCGATGAAGGAAATTATACTTGTCCACTCACAAATCAAATTGTGAAGAATTTTGATATGATTCCAAATCATTCTCTTAGGATAATGATTCAAGATTGGTGTgttgaaaatagtaaaaatggtGTTGAGAGGATTCCGACACCAAGAATACCGATTAGTCCTATCGATGTTTCTGAGCTTCTTTTTCGAGTTATGGAATCGGCAAGAAGTTTGGATCAATATGGTTGTATTGGATTGGTGCAAAAAATGGAGAAATGGAGTAATGAAAGTGAGAGGAATAAAAAGTGTATAGTTGAAAATGGAGCAACAAGTGCATTGGCTTTAGCATTTGATGCTTTTGCTAATGATTCTATTGAGAGAAATGTTGTTGTTTTAGAAGTGATTTTGTCAGCACTTAATTGGATGTTTCCACTTCAATTAGAAGCTCAAAAAAGTTTAGGCTCAAAAGCTTCATTGCATTGCATGGTTTGGTTTTTGAAACATCAAGATGTTAAGGGAAAAGAAAAAGCTATTATTGCATTGAAAGAGATTCTTTCTTTTGGTGATGAGAAGCATGTGGAAGCACTTTTAGAGATTGAAGAGTACTCTGTTTCTTCTATTTGGAAAATGTGCaaatttgaagagaaaaattaTGAAGGAAAAGCTTTGATAGAAGCACTTCAAGTTGGTGCTTTTCAGAAGCTATTATTGGTATTACAAGTTGGTTGTAGTGATGACACAAAAGATAAAGCAACTgagcttctcaaattgatgaATCCTTATAGGGCTGAATTGGAAGAATGCATTGATTCAGATTTCAAGAATCTCAAAAGATCATattaa 936 0.3205 MEVVIPNQFKCPITLDLMKDPVTLSTGITYDRESVERWFDEGNYTCPLTNQIVKNFDMIPNHSLRIMIQDWCVENSKNGVERIPTPRIPISPIDVSELLFRVMESARSLDQYGCIGLVQKMEKWSNESERNKKCIVENGATSALALAFDAFANDSIERNVVVLEVILSALNWMFPLQLEAQKSLGSKASLHCMVWFLKHQDVKGKEKAIIALKEILSFGDEKHVEALLEIEEYSVSSIWKMCKFEEKNYEGKALIEALQVGAFQKLLLVLQVGCSDDTKDKATELLKLMNPYRAELEECIDSDFKNLKRSY 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03665 311 CDD RING-Ubox_PUB 9 51 IPR045210 -
Tsu06g03665 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 78 IPR013083 -
Tsu06g03665 311 PANTHER WDSAM1 PROTEIN 1 231 IPR045185 GO:0061630
Tsu06g03665 311 SUPERFAMILY ARM repeat 117 289 IPR016024 -
Tsu06g03665 311 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 231 - -
Tsu06g03665 311 ProSiteProfiles U-box domain profile. 4 78 IPR003613 GO:0004842|GO:0016567
Tsu06g03665 311 Pfam U-box domain 5 76 IPR003613 GO:0004842|GO:0016567
Tsu06g03665 311 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 232 311 - -
Tsu06g03665 311 SUPERFAMILY RING/U-box 4 79 - -
Tsu06g03665 311 SMART Ubox_2 8 71 IPR003613 GO:0004842|GO:0016567
Tsu06g03665 311 PANTHER WDSAM1 PROTEIN 232 311 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03665 Tsu-Chr6 48481593 48482849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03665 253 311 U-box Gene Family AT5G37490 50.820 8.47e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03665 - - gmx:100794340 378.252