Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g03655 atggcaaaaCCATATTCTTTGCTCTGTATTCTCTCTGCCTCACTCTATTCTTACTTCTTCACATGTTTAGCAATGAGTAGTAAAAAGAATATCACCACCGATGAATTTGCACTTCTTGCATTCAAATCATCTATTACCTTAGACCCTTATCATATACTTAGTAATTGGTCAATTTCCTCTTCTTCTAATTCTTCTTTCTCATCGTGCAATTGGCTTGGTGTCACTTGTGATGAGCATCATGGAAGAGTAAAGGCATTGAATCTTGGTAACATGGGCCTTATAGGTACCATTTCTCCTCAATTGGGAAATCTTTCTTTCCTTGTTGTTCTTGATCTACATGGTAATAATTTCCATGGTGAGTTACCACATGAGTTACTTCACTTGAAGAGATTGAAATTGTTGAATTTGAGCAACAATGGTTTTGTTGGGGAAATTCCATCAAGGATAGGGGACTTATACAAACTTCAACAATTGGATCTTGGctataataattttgttggatttatccCTCAATCTATATCCAATTTGTCAATGTTAGAGTATCTAAATTTGAAATCTAATCTCATCAAAGGAACCATTCCGTATGTTATTGGTCAACTTCGTCGGTTGAGGATTTTGCATATCAGTAACATTAAGCTGTTGTCTGGAATCATACCAAAGACAGTTTCCAACCTGTCCTCCCTTGAAGAAATCTACTTAACAAATAACTCCTTATCAGGAGAAATTCCAAGAGGAATCGGTGATCTTGCACAATTGAGAAGGGTGAACCTTCAACATAATATTCTCACAGGCAACATATTTATGTTCAACAACTCATTATTGCAACACTTGAAACTTGGTAATAATAATTTGACCGGCATTCTTCCATCAAATGTTTGTCAAAGGCTTCCAAACCTTAAATTGCTCTATCTTTACTTTAATGATTTCTCTGGTGAGATGCCAAAAGTTTGGCGTTATTGCAAAGAGTTGGAAGATTTAGAGCTATCATACAATAATTTTGACAAAGGACGTATGCCACCTGACATTGGAAAATTGACCAAGCTTCAATATTTGTATCTTGTTTCAACCAACTTGCATGGTTCGATACCAATGGAGATTGGTCATCTCAATCAACTCCAAGTTTTGTATCTAGCAAATAACAGCTTGAGTGGACCTATTTCTTCAAAACTCCTCAACATTTCAACATTAGAATTTGTGTCTCTTGAGCAAAATTTTCTCTCAGGCATGCTTCCATCAAATATGGGATTTGGTCTTCCTAACCTACAAGCACTAGACATATATGGAAACAACTTTGTTGGAAAACTTCCAGATAGTATATCAAACGCTTCAAATCTTGTTCAACTTGACTTGAGTGAAAATGAATTTAGTGGAATTATACCAAATTCTTTTGGTGATTTAAGAGTCCTCGAAGTCCTCTTCATGGAAAGCAATAATTTGACATTAAATGATGATTCTCTTGAAATAGACTTCCTTACTTCACTTGCTAGTTGCAAATATCTTGCATATCTTGTTGTATCGGAGAATTGGTTACTTTCAAAACTTCGCATGTCCATTGGAAACTTATCTAATTTAGAACAATTTTTTGCAGATTCTCTTAGAATTAAAGGAAATATTCCACTGGAAATTGGAAACATGAGCAACCTCATTCGATTATCTTTGAGTCAAAATGATTTAAATGGACCAATCCCGAGTACAATTAAAGGTTTACATAAGCTTCAGTCTTTGAATCTTGACTACAATGGACTCCAAGGATCTATAGTTCATGAGATTTGTGAAATTAGGAGTTTGAGTGAATTGAATTTAACAAACAATAAGCTTTTTGGAGAGATACCAACATGTTTGGGAAATATGACTTTACTTAGAAAGTTTCACATAGGATCTAATAGGTTGACCTCTAAGATACCTTCCTCCTTTTGGAATCTCAAAGATATTTTAGAGGTAAGCATATCCTCCAATGCTTTAATTGGAAATCTTCCACCTGAGATTCAAAATTTGAGAGCTCTTGTAAGATTAGATTTGTCAAGAAATCAAATTTCAAGTGTCATCCCAAAATCATTAGAGTCACTTTCTTATCTTAAATACATAAATCTATCATACAATAGATTGCAAGGAGAAATTCCTGATGGAGGACCTTTCAAAAGATTCACAACACAATCTTTCATGCATAATGAAGCACTTTGCGGCAATCCTCGCTTACAAGTTCCTCCATGTGATAAACATagaaataaaaggaaaaaggtTGAAAATCCACTTAAAAGTGTTTTGTCAGCTAATTTAGGGGTTCCAAGAAGAGTATCCTACTATGAACTTGTGAAAGCAACTAATGACTTTAATGAAAGTAATTTACTTGGAAAGGGTGGCTTTGGATCTGTGTATCAAGGAATTCTTTCTAGTGGGAAGATGGTGGCTATTAAAGTACTTGACTTGACATTGGAAGCAACATCAAGAAGCTTTGATGCAGAATGTAATGCAATGCGCAACCTTCGACATCGAAATATTGTCCATGTTATCAGTAGTTGTTCAAATGATGATTTCAAATCTCTGGTGATGGAGTTTATGCCAAATGGAAGTTTGGAAAAATGGTTATACTCTGAGAACTACTGTTTAGATTTCTTGCAAAGGTTGAATATAATGATAGATGTGGCATCTGCATTGGAGTATCTACATCATGGTTCATCAATTCCGGTGGTTCATTGTGATTTGAAGCCTAGTAATGTTTTACTAGATGAATATATGGTTGCGCATGTTAGTGATTTTGGCATTTCCAAACTCTTAGATGAAGGACAATCAAAAACCCATACTGAAACTTTAGCTACTCTTGGTTATGTTGCACCAGAATATGGATCTAAGGGAGTCATTTCAATTAAAGGAGATGTGTACAGCTATGGGATAATGCTAATGGAAATGTTCACCCGAAAGAAACCAACAAATGAAATGTTTTCAGAAGAATTAACCTTGAAAACTTGGATTAGTAAATCAATGGTCAATTCGGTTATGGAAGTTGTGGATTACAATTTAGTCTCACAGCATGAGAAAGAACTTCATGAAATTTTAGCTTTAGCTTTGAGTTGTTGTGCAGATTCCCCTGAGGCAAGAATTGAAATGACAGATGTAACTGTATCGTTAATCAAAATCAAGACCTTAGTCATGCGGTACCCTGACGACATTTTCGATCGAATATGGACACCGGCAGTCGGTATCCTTCTTTCCGAAGTAAAAAGTGAGGAATCAAGATTTGATATTACTACAGCAGAAGATCATCCACCAGAAGCTGCATTACAAAATGCTATTGTTTCATCAAGCACATTAGAATACATACAATTTATCAATAGGCTTCCAACTGAGGAACATCCTGTTTATATAAATGCTTATTTCTCAGAAGTGATGGAAAGTGCTTTTGGAAAAAGATCAATTCAGATGAATATAGATGGAATGCCCTTTTTAAGTCCTATAGTTCCTCCTCTTGGAAGTGTGAAAGAAGTGTATATTACAAATATTTCAGCTTCAGCAAACACTACATTTATTCTGCAGGCTTCATATTCTTCCACTTTTCCTCCTATACTTAATGCTCTTGAAGTTTTTACAATAAGTGATTCATTCAATGCAGGAACTGATAGTAGAGATG 3625 0.347 MAKPYSLLCILSASLYSYFFTCLAMSSKKNITTDEFALLAFKSSITLDPYHILSNWSISSSSNSSFSSCNWLGVTCDEHHGRVKALNLGNMGLIGTISPQLGNLSFLVVLDLHGNNFHGELPHELLHLKRLKLLNLSNNGFVGEIPSRIGDLYKLQQLDLGYNNFVGFIPQSISNLSMLEYLNLKSNLIKGTIPYVIGQLRRLRILHISNIKLLSGIIPKTVSNLSSLEEIYLTNNSLSGEIPRGIGDLAQLRRVNLQHNILTGNIFMFNNSLLQHLKLGNNNLTGILPSNVCQRLPNLKLLYLYFNDFSGEMPKVWRYCKELEDLELSYNNFDKGRMPPDIGKLTKLQYLYLVSTNLHGSIPMEIGHLNQLQVLYLANNSLSGPISSKLLNISTLEFVSLEQNFLSGMLPSNMGFGLPNLQALDIYGNNFVGKLPDSISNASNLVQLDLSENEFSGIIPNSFGDLRVLEVLFMESNNLTLNDDSLEIDFLTSLASCKYLAYLVVSENWLLSKLRMSIGNLSNLEQFFADSLRIKGNIPLEIGNMSNLIRLSLSQNDLNGPIPSTIKGLHKLQSLNLDYNGLQGSIVHEICEIRSLSELNLTNNKLFGEIPTCLGNMTLLRKFHIGSNRLTSKIPSSFWNLKDILEVSISSNALIGNLPPEIQNLRALVRLDLSRNQISSVIPKSLESLSYLKYINLSYNRLQGEIPDGGPFKRFTTQSFMHNEALCGNPRLQVPPCDKHRNKRKKVENPLKSVLSANLGVPRRVSYYELVKATNDFNESNLLGKGGFGSVYQGILSSGKMVAIKVLDLTLEATSRSFDAECNAMRNLRHRNIVHVISSCSNDDFKSLVMEFMPNGSLEKWLYSENYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDEYMVAHVSDFGISKLLDEGQSKTHTETLATLGYVAPEYGSKGVISIKGDVYSYGIMLMEMFTRKKPTNEMFSEELTLKTWISKSMVNSVMEVVDYNLVSQHEKELHEILALALSCCADSPEARIEMTDVTVSLIKIKTLVMRYPDDIFDRIWTPAVGILLSEVKSEESRFDITTAEDHPPEAALQNAIVSSSTLEYIQFINRLPTEEHPVYINAYFSEVMESAFGKRSIQMNIDGMPFLSPIVPPLGSVKEVYITNISASANTTFILQASYSSTFPPILNALEVFTISDSFNAGTDSRD 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g03655 1208 Gene3D Ribonuclease Inhibitor 31 192 IPR032675 -
Tsu06g03655 1208 Gene3D Ribonuclease Inhibitor 387 482 IPR032675 -
Tsu06g03655 1208 SMART LRR_typ_2 569 593 IPR003591 -
Tsu06g03655 1208 SMART LRR_typ_2 176 200 IPR003591 -
Tsu06g03655 1208 SMART LRR_typ_2 296 319 IPR003591 -
Tsu06g03655 1208 SMART LRR_typ_2 443 465 IPR003591 -
Tsu06g03655 1208 SMART LRR_typ_2 418 442 IPR003591 -
Tsu06g03655 1208 SMART LRR_typ_2 665 688 IPR003591 -
Tsu06g03655 1208 SMART LRR_typ_2 152 175 IPR003591 -
Tsu06g03655 1208 SMART LRR_typ_2 617 640 IPR003591 -
Tsu06g03655 1208 SMART LRR_typ_2 104 128 IPR003591 -
Tsu06g03655 1208 SMART LRR_typ_2 225 249 IPR003591 -
Tsu06g03655 1208 SMART LRR_typ_2 369 393 IPR003591 -
Tsu06g03655 1208 SUPERFAMILY RNI-like 418 707 - -
Tsu06g03655 1208 Gene3D Ribonuclease Inhibitor 293 386 IPR032675 -
Tsu06g03655 1208 SUPERFAMILY RNI-like 86 407 - -
Tsu06g03655 1208 SMART serkin_6 777 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03655 1208 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 759 1047 - -
Tsu06g03655 1208 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 670 755 - -
Tsu06g03655 1208 PANTHER - 214 404 - -
Tsu06g03655 1208 PANTHER - 378 683 - -
Tsu06g03655 1208 SUPERFAMILY Protein kinase-like (PK-like) 759 1042 IPR011009 -
Tsu06g03655 1208 Pfam Protein kinase domain 778 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03655 1208 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 6 130 - -
Tsu06g03655 1208 SMART LRR_sd22_2 152 178 - -
Tsu06g03655 1208 SMART LRR_sd22_2 665 686 - -
Tsu06g03655 1208 SMART LRR_sd22_2 225 251 - -
Tsu06g03655 1208 SMART LRR_sd22_2 369 395 - -
Tsu06g03655 1208 SMART LRR_sd22_2 545 571 - -
Tsu06g03655 1208 ProSiteProfiles Protein kinase domain profile. 777 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g03655 1208 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 130 265 - -
Tsu06g03655 1208 Pfam Leucine rich repeat N-terminal domain 33 77 IPR013210 -
Tsu06g03655 1208 Gene3D Ribonuclease Inhibitor 193 292 IPR032675 -
Tsu06g03655 1208 PANTHER - 6 130 - -
Tsu06g03655 1208 PANTHER - 130 265 - -
Tsu06g03655 1208 Gene3D Phosphorylase Kinase; domain 1 760 852 - -
Tsu06g03655 1208 Pfam Leucine Rich Repeat 595 616 IPR001611 GO:0005515
Tsu06g03655 1208 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515
Tsu06g03655 1208 ProSitePatterns Protein kinases ATP-binding region signature. 783 805 IPR017441 GO:0005524
Tsu06g03655 1208 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Tsu06g03655 1208 Pfam Malectin-like domain 1048 1196 IPR024788 -
Tsu06g03655 1208 Pfam Leucine rich repeat 647 702 IPR001611 GO:0005515
Tsu06g03655 1208 Pfam Leucine rich repeat 419 479 IPR001611 GO:0005515
Tsu06g03655 1208 Pfam Leucine rich repeat 201 260 IPR001611 GO:0005515
Tsu06g03655 1208 Gene3D Transferase(Phosphotransferase) domain 1 853 1053 - -
Tsu06g03655 1208 PANTHER - 759 1047 - -
Tsu06g03655 1208 PANTHER - 670 755 - -
Tsu06g03655 1208 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 214 404 - -
Tsu06g03655 1208 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 378 683 - -
Tsu06g03655 1208 Gene3D Ribonuclease Inhibitor 483 746 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g03655 Tsu-Chr6 48330580 48347817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g03655 33 610 Receptor kinase-like Gene Family AT3G47570 35.563 8.56e-77 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu06g03655 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g03655 - K13420 mtr:MTR_8g465340 1008.44